Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30044
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919     27   5.0  
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773...    27   5.0  
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211...    27   6.6  
04_04_0974 + 29831274-29833184                                         27   6.6  
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047...    27   6.6  
08_02_1494 + 27523016-27524040,27524971-27525118                       26   8.7  
08_01_0319 + 2848751-2848762,2849516-2850449,2850476-2851234,285...    26   8.7  

>12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919
          Length = 236

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 218 CRERHSHSHGVVS----HIYATVNLSRWQRSTS*CVRCK 114
           C ER   + G++     HI+ +  L RW RS S C  C+
Sbjct: 189 CLERCGDADGLLELRCKHIFHSACLERWLRSRSDCPYCR 227


>08_02_1237 +
           25475219-25475916,25476127-25476320,25476407-25477302,
           25477416-25477490,25477582-25477689,25477780-25477897,
           25478007-25478142,25478228-25478372,25478460-25479080,
           25479166-25479597
          Length = 1140

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 101 HASTACSEHINSCSAANARD*L*RICVKLPHVSES---GVLYTEVDNCLFPRPRAYLNNE 271
           + ST+CS+H  S S ++ +D   RI  KL     S   G L  E+ N L   P     NE
Sbjct: 578 YTSTSCSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSP-----NE 632

Query: 272 IKNYLR 289
           ++ Y+R
Sbjct: 633 MEGYIR 638


>07_01_0292 -
           2117212-2117326,2117402-2117527,2117654-2117791,
           2117904-2118323,2118421-2118591,2118701-2118880,
           2118988-2119140,2119226-2119384,2119841-2120152,
           2120285-2120452,2120851-2121050,2122207-2122589,
           2123244-2123625
          Length = 968

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 158 LSRWQRSTS*CVRCKQWTRVEDCQHASA 75
           L R+QRS + C+  K W   ED Q  +A
Sbjct: 429 LVRYQRSLNHCILNKDWAEEEDLQLQAA 456


>04_04_0974 + 29831274-29833184
          Length = 636

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 84  VLTVFDTRPLLAANTLTRAPLPTREINCSVYV 179
           V  +FD   L       RAPLP    NC VYV
Sbjct: 205 VREMFDKVLLCNGECELRAPLPAEARNCGVYV 236


>04_03_0826 +
           20103105-20103697,20104222-20104391,20104487-20104716,
           20104825-20104933,20104967-20105154,20105818-20105919,
           20106114-20106395,20106504-20106625,20106708-20107020,
           20107096-20107329,20107477-20107767,20107975-20108286
          Length = 981

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 60  AEALSGGRVLTVFDTRPLLAANTLTRAPLPTR 155
           A A  GGR + V   RP+ A+  L  AP P R
Sbjct: 30  AGAGGGGRAVAVAAGRPIRASAALLAAPAPRR 61


>08_02_1494 + 27523016-27524040,27524971-27525118
          Length = 390

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 123 SLQAVDACRRLSTRVRRLT 67
           SL  + ACR++STR RRLT
Sbjct: 27  SLDDLAACRQVSTRWRRLT 45


>08_01_0319 +
           2848751-2848762,2849516-2850449,2850476-2851234,
           2851793-2851850,2851900-2852179
          Length = 680

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 280 LPTM*LFVEVNYRISDNISNNKGFFVI 360
           +PTM LFV+  Y  SD + N K FF +
Sbjct: 109 VPTM-LFVDFAYPYSDRLDNLKYFFTL 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,211,757
Number of Sequences: 37544
Number of extensions: 142486
Number of successful extensions: 344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)