Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30040
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1127 + 34292894-34293284,34293948-34295443                       29   3.7  
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891...    29   3.7  

>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 61  RQTLRPRRRWPPGTVG 14
           R T +P+RRWPPG+ G
Sbjct: 83  RATGQPKRRWPPGSSG 98


>02_05_0329 -
           27986261-27987372,27988632-27988638,27988999-27989128,
           27989157-27989216,27989318-27989970,27990056-27990526
          Length = 810

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 266 VRSNICHNREFSRAVC*KLESMSHP 192
           V+S +C + EF R++  +L S+ HP
Sbjct: 154 VKSRVCEDAEFGRSLFERLSSLGHP 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,516
Number of Sequences: 37544
Number of extensions: 243444
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)