Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30026X
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596...    74   4e-14
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971...    71   4e-13
07_03_1396 - 26259614-26259739,26259853-26259939,26260032-262604...    29   1.2  
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    27   3.8  
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630...    27   5.0  
01_06_0050 + 25967604-25967685,25967780-25967891,25969238-259693...    27   5.0  
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183...    27   6.6  

>03_02_0154 +
           5967512-5967658,5968206-5968652,5968766-5968846,
           5969058-5969075,5969552-5969748,5969844-5969943,
           5970676-5970861
          Length = 391

 Score = 73.7 bits (173), Expect = 4e-14
 Identities = 37/69 (53%), Positives = 46/69 (66%)
 Frame = +1

Query: 1   LTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTF 180
           LTLKL  F++ PA Q GD LIQLYNNF+T FE+KIN L L         QY +K  A++F
Sbjct: 35  LTLKLDHFLQLPAAQTGDTLIQLYNNFITDFETKINLLKLAHFAVIASRQYPDKDAAISF 94

Query: 181 LEKVETKVK 207
           LE V TK++
Sbjct: 95  LEGVITKLR 103


>01_05_0085 -
           17995800-17995985,17996724-17996823,17996919-17997115,
           17997836-17997916,17998046-17998492,17998774-17998920
          Length = 385

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 35/73 (47%), Positives = 46/73 (63%)
 Frame = +1

Query: 1   LTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTF 180
           LTLKL  F++ PA Q GD +IQLYNNF++ FE+KIN L L         QY +K  A++F
Sbjct: 35  LTLKLDHFLQLPAAQTGDTIIQLYNNFISDFETKINLLKLAHFAVIASRQYPDKDAAISF 94

Query: 181 LEKVETKVKMNDE 219
           LE V  K++   E
Sbjct: 95  LEGVTAKLRETRE 107


>07_03_1396 -
           26259614-26259739,26259853-26259939,26260032-26260409,
           26260497-26260692,26260794-26261032,26261132-26261272
          Length = 388

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 4   TLKLQEFVKNPALQR-GDNLIQLYNNFLTTFESKINPLSLVEIIAHI 141
           T+ L EF  + A Q  GDN +Q   N     +SK+ PLS ++ I++I
Sbjct: 169 TVHLSEFPNDFAAQSVGDNAVQTVGN-----QSKVTPLSWIDCISNI 210


>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 363 YKIVRELESHHQHLRVYFLNVQLFSR------LHHNHSAVQCNLSL*HLTQSQCFIIHFN 202
           Y +  ELES  + ++ YF NV+   R      +H   S   C   +  L ++  + + +N
Sbjct: 730 YHVQTELESLEKKIKTYFRNVESIDRSTDELNIHFKLSQSACQEGIRQLCETFAYKVIYN 789

Query: 201 FRFHLL 184
              H+L
Sbjct: 790 DLSHVL 795


>07_03_0755 -
           21261855-21261945,21262277-21262323,21262819-21263014,
           21263239-21263340,21263602-21263678,21264037-21264236,
           21264324-21264681,21265245-21265301,21265434-21266192,
           21266287-21266468,21266651-21266813
          Length = 743

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 88  TFESKINPLSLVEIIAHIVEQYVNKRDAV 174
           T  SKI+PL+L + ++  VEQ +   D +
Sbjct: 417 TLNSKIDPLTLDDSLSQFVEQCLGSEDVI 445


>01_06_0050 +
           25967604-25967685,25967780-25967891,25969238-25969361,
           25969486-25969527,25969622-25969735,25969843-25969905,
           25970741-25970868,25972198-25972279,25972372-25972423,
           25972515-25972612,25972845-25973006,25973484-25973573,
           25973700-25973777
          Length = 408

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 218 SSFILTFVSTFSRNVTASLLLTYCSTI*AMIST 120
           +S + T++S    NV  S+L+T CSTI A++ T
Sbjct: 202 ASNVATYIS--KGNVALSVLMTTCSTIGAIVMT 232


>06_01_0243 -
           1837830-1837886,1837969-1838016,1838113-1838255,
           1838784-1838982,1839085-1839265,1839857-1840228,
           1841453-1841658
          Length = 401

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +3

Query: 267 LNDYDAAEKIIEHLES----TLEDADGVTPVHGRFYK-LAW 374
           LN Y+A + I  HLES      ++ DGV+PV     K L W
Sbjct: 173 LNLYEAEDAINRHLESLKCPMFKEQDGVSPVERMIQKSLYW 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,736,238
Number of Sequences: 37544
Number of extensions: 174957
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)