Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30013X
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    29   1.0  
12_02_0346 - 17776871-17781445                                         28   1.8  
05_03_0177 - 9245131-9245793                                           27   4.1  
10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485           27   5.5  
06_01_1097 + 8996985-8997635                                           27   5.5  
08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    26   7.2  
07_03_0832 - 21823518-21823826,21823920-21824070,21824148-218243...    26   9.6  
01_06_0843 - 32374830-32374958,32375407-32375482,32375572-323756...    26   9.6  

>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
            28679221-28679265,28679523-28679594,28679721-28679759,
            28679966-28680061,28680492-28680566,28681717-28681764,
            28681888-28681971,28682141-28682341,28682394-28682561,
            28683232-28683372,28683470-28683517,28683845-28684087,
            28684184-28684297,28685134-28685163,28685361-28685951,
            28686033-28686620,28686744-28686863,28687764-28687938,
            28688397-28688562,28688653-28688755,28689227-28689319,
            28690759-28690918,28691754-28691872
          Length = 1275

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 149  LSSPRLFFCLFTNKKRHDSMYRVLCRDIVVP--GFHEALCLVRVFNGFG 289
            L SP+      +  KRH S++  LC  +V P   F   + L  +FN +G
Sbjct: 927  LVSPKQSAVSVSEAKRHTSLFFALCTKVVKPFSFFQRPILLQHLFNVYG 975


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 60  NYN*FLHLKYMKHNKYKLCLFSISNNIVNYFLLL 161
           N++  +HL+Y++    ++C  S+ N+I  ++ LL
Sbjct: 688 NFSELVHLRYLRIKDSRMCGASLPNSITRFYHLL 721


>05_03_0177 - 9245131-9245793
          Length = 220

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 217 SLSRHCGSRLPRGTVPSA 270
           S+SR CG R  RGT+PS+
Sbjct: 173 SVSRGCGRRRQRGTLPSS 190


>10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485
          Length = 346

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 152 SSPRLFFCLFTNKKRHDSMYRVLCR-DIVVPGFHEALCL 265
           SSP LFF  F NKK       + C+ D+ +P      CL
Sbjct: 245 SSPVLFFAEFDNKKAEGEPAIMCCKVDMPLPFAEHVRCL 283


>06_01_1097 + 8996985-8997635
          Length = 216

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 217 SLSRHCGSRLPRGTVPS 267
           S+SR CG R  RGT+PS
Sbjct: 173 SVSRGCGRRRQRGTLPS 189


>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 141 VNYFLLLDCFFVYLQIKNGTILCTGFFVATLW 236
           +NYFL++ C  + +  K G  +   F VA ++
Sbjct: 443 INYFLMVACILITVGFKGGPEIGQAFGVAVIF 474


>07_03_0832 -
           21823518-21823826,21823920-21824070,21824148-21824385,
           21824469-21824679,21824789-21825009,21825590-21825697,
           21825813-21826142,21826740-21827050,21828969-21829651
          Length = 853

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 300 TFPLPKPLKTRTRHSASWKPGTTMSRQRTLYIESCRFLFVNRQKN 166
           T  L  P      H A WK  T +S      + +C FL+  R +N
Sbjct: 431 TLNLKLPASELRSHHAVWKIATIVSAVVLFVLLACLFLWWKRGRN 475


>01_06_0843 -
           32374830-32374958,32375407-32375482,32375572-32375693,
           32375834-32375908,32376007-32376142,32376223-32376311,
           32377304-32377466,32379772-32379860,32379983-32380061,
           32380195-32380240,32380718-32380801,32380919-32380982,
           32381103-32381156,32381279-32381347,32381470-32381778
          Length = 527

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SNNIVNYFLLLDCFFVYLQIKNGTILC 209
           + ++V  +LL DC+  Y  +  G ++C
Sbjct: 291 AESLVKDYLLADCYVSYTAVLGGILMC 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,079,161
Number of Sequences: 37544
Number of extensions: 153647
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)