Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30008X
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 124 5e-29
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 124 5e-29
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 30 1.6
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 3.7
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 3.7
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 4.9
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 4.9
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 6.5
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 6.5
05_02_0051 - 6110320-6110375,6110554-6110696,6111011-6111124,611... 27 8.5
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532 27 8.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 124 bits (299), Expect = 5e-29
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALCNTDSPLR 507
HQPI E++ NIP IA C+TDSP+R
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMR 159
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 245 IENP 256
IENP
Sbjct: 72 IENP 75
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 124 bits (299), Expect = 5e-29
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALCNTDSPLR 507
HQPI E++ NIP IA C+TDSP+R
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMR 159
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = +2
Query: 32 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 211
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 212 KLVLAARAVVAIENP 256
KL LAAR +VAIENP
Sbjct: 61 KLQLAARVIVAIENP 75
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 208 GKTCSGCSCCRSHREPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 384
G+ SGC CR D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 385 AFREPRLLIVLD 420
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 132 TFSAPRWVVAASILVTSSSLRASTSNP 52
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 273 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 365
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 319 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 492
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 493 DSPLRL 510
+ P+++
Sbjct: 330 EQPMQI 335
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 139 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 246
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 584 NVPTTTNIKPNRVGRLGVAWDSNVHNLSGESVLHKAITGMLTYEASVMG*WSCAGSN--T 411
N + T++ G AW SN ++ SG S + I G+ + S G WS AGSN T
Sbjct: 397 NSGSATSVTGANSGSYSSAW-SNSNSNSG-STMPSGI-GVASNAGSSSGSWSNAGSNTGT 453
Query: 410 IKRRGSRN 387
+ GS N
Sbjct: 454 LSGAGSSN 461
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 175 WYPCDQLASYLGKTCSGCSCCRSHREP 255
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_02_0051 -
6110320-6110375,6110554-6110696,6111011-6111124,
6111586-6111685,6111768-6111850,6112003-6112087,
6112773-6112828,6113569-6114056
Length = 374
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 129 FSAPRWVVAASILVTSSSLRASTSNPPDIVALI*VTTK 16
FS +VAA+ L + S RA+T PP + A+ T K
Sbjct: 58 FSVACLLVAAASLAFAFSARAATLQPPPLAAVAEATAK 95
>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
Length = 119
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 268 RTHQRVLDGY---DSTSSQNKFFPGTTQVDHMGTISTSFVDIGL 146
R QRV +G + ++++ + P TT +GTIS+ VD+GL
Sbjct: 65 RARQRVGEGVRLDNGLANRDWYLPSTTHA--VGTISSGVVDVGL 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,922
Number of Sequences: 37544
Number of extensions: 422599
Number of successful extensions: 1045
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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