Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10508
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 98 3e-21
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 95 4e-20
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 95 4e-20
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.7
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 29 2.7
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.8
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.3
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 98.3 bits (234), Expect = 3e-21
Identities = 44/66 (66%), Positives = 57/66 (86%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 236
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 237 GGGKST 254
GGGKST
Sbjct: 71 GGGKST 76
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +2
Query: 257 FALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 400
F LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 78 FGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 94.7 bits (225), Expect = 4e-20
Identities = 43/66 (65%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 236
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 237 GGGKST 254
GGGKST
Sbjct: 71 GGGKST 76
Score = 39.5 bits (88), Expect(2) = 2e-08
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 197 SRCSVRIRFQDKLRRWQVN*FALIYDTLDLAKKFEPKHRLAR 322
S C +F+ + F LIYD LD AKK+EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 2e-08
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 323 HGLYEKKRPTRKQRKERKNRMKKVRG 400
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 94.7 bits (225), Expect = 4e-20
Identities = 43/66 (65%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 236
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 237 GGGKST 254
GGGKST
Sbjct: 71 GGGKST 76
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/68 (51%), Positives = 43/68 (63%)
Frame = +2
Query: 197 SRCSVRIRFQDKLRRWQVN*FALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 376
S C +F+ + F LIYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 377 NRMKKVRG 400
NR KK+RG
Sbjct: 118 NRAKKIRG 125
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 220 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 41
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 268 LRHTRSGQEVRAQAQVSPPRPVREEEAHA 354
+R + G E AQ+ PPRPV + +HA
Sbjct: 159 VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -3
Query: 169 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 41
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 326 GLYEKKRPTRKQRKERKNRMKK 391
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,060
Number of Sequences: 37544
Number of extensions: 264610
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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