Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10502
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0090 - 12347165-12348349                                         30   1.8  
05_01_0264 + 2030080-2031270                                           30   2.4  
01_02_0051 - 10655867-10657057                                         30   2.4  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    28   9.8  

>01_03_0090 - 12347165-12348349
          Length = 394

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 6   RTSTYGHFGR--AGFPWESPKPLIVE 77
           +T+ YGHFGR    F WE  KPL  E
Sbjct: 365 KTAAYGHFGREDPDFTWEVVKPLKYE 390


>05_01_0264 + 2030080-2031270
          Length = 396

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 6   RTSTYGHFGR--AGFPWESPKPL 68
           +T+ YGHFGR    F WE  KPL
Sbjct: 367 KTAAYGHFGRDDPDFTWEVVKPL 389


>01_02_0051 - 10655867-10657057
          Length = 396

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 6   RTSTYGHFGR--AGFPWESPKPL 68
           +T+ YGHFGR    F WE  KPL
Sbjct: 367 KTAAYGHFGREDPDFTWEVVKPL 389


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 291 KNTYLITMNLVNERSSDLSGITVPLARF*SHYSLKRDTGDAAPSLQ*HT--YISVYYILM 118
           KN Y + +NLV  + +D +     L ++  H   K++  D A S   HT  ++   Y++ 
Sbjct: 344 KNLYTVAINLVQSQQADPASTAEVLRKYGDHLYGKQEY-DEAMSQYIHTIGHLEPSYVIQ 402

Query: 117 EYL 109
           ++L
Sbjct: 403 KFL 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,154,480
Number of Sequences: 37544
Number of extensions: 356062
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)