Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10499
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488...    70   1e-12
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852...    55   5e-08
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455...    46   2e-05
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032...    43   2e-04
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572...    31   0.65 
07_01_0479 + 3606663-3607448                                           31   0.86 
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140...    28   4.6  
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    28   6.1  
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112...    28   6.1  
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    28   6.1  
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    27   8.0  

>03_04_0043 +
           16747103-16747137,16747237-16747259,16748735-16748856,
           16748980-16749042
          Length = 80

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
 Frame = +3

Query: 108 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           MS++  PP+LKK+MDKKL IKLNA R + G LRGFD FMNLV+D +VE
Sbjct: 1   MSRSGQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE 48



 Score = 33.9 bits (74), Expect = 0.093
 Identities = 11/21 (52%), Positives = 20/21 (95%)
 Frame = +2

Query: 266 RNNVGMVVIRGNSIIMLESLD 328
           + ++GMVV+RGNS++M+E+L+
Sbjct: 54  KTDIGMVVVRGNSVVMIEALE 74


>07_03_1222 -
           24983294-24983356,24983695-24983858,24985209-24985231,
           24985340-24985374
          Length = 94

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 15/62 (24%)
 Frame = +3

Query: 108 MSKA-HPPELKKFMDKKLS--------------IKLNAGRAVTGVLRGFDPFMNLVLDES 242
           MS++  PP+LKK+MDKKL               +KLNA R V G LRGFD FMNLV+D +
Sbjct: 1   MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60

Query: 243 VE 248
           VE
Sbjct: 61  VE 62



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 13/22 (59%), Positives = 22/22 (100%)
 Frame = +2

Query: 263 QRNNVGMVVIRGNSIIMLESLD 328
           ++N++GMVVIRGNS++M+E+L+
Sbjct: 67  EKNDIGMVVIRGNSVVMIEALE 88


>08_01_0523 +
           4556309-4556311,4556434-4556515,4557528-4557548,
           4557824-4557895,4558259-4558311,4558721-4558807
          Length = 105

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 7/47 (14%)
 Frame = +3

Query: 129 ELKKFMDKKLSIKLNAGR-------AVTGVLRGFDPFMNLVLDESVE 248
           +L KF+DK + +KL  GR       +VTG L+G+D  +NLVLDE+VE
Sbjct: 10  DLAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVE 56


>05_07_0342 +
           29402867-29402906,29403012-29403052,29403146-29403220,
           29403523-29403648,29404195-29404247,29404385-29404475
          Length = 141

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +3

Query: 126 PELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           P L+  +D+ +S+  N GR + G LRGFD   N++LDES E
Sbjct: 6   PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46


>04_03_0358 -
           14856490-14856573,14856829-14856874,14857116-14857229,
           14857366-14857401,14857822-14857946,14858052-14858117,
           14858295-14858534,14858900-14859001,14859101-14859138,
           14859219-14859321,14859402-14859524,14860666-14860742,
           14860853-14860998,14861077-14861246
          Length = 489

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 310 YNTVATNYHHPNIVTLTVLHSSTDSSRTKFMNGSKPRNTPVTARPA 173
           YN +A  YHHP I  L   +SS  SS  K   G   +  PV  R A
Sbjct: 261 YNILAPCYHHPEIQELEFKNSSLPSSFRKL--GETEKRFPVRKRMA 304


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           MS     ++ +F++ ++ + +  GR + G    FD  MNLVL +  E
Sbjct: 1   MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47


>02_01_0209 -
           1399613-1399622,1399719-1399764,1399849-1399927,
           1400004-1400162,1400988-1401050,1401154-1401222
          Length = 141

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 201 RGFDPFMNLVLDESVE 248
           +GFD +MNLVLDE+ E
Sbjct: 97  KGFDEYMNLVLDEAEE 112


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 186 VTGVLRGFDPFMNLVLDESVE 248
           + G + GFD +MNLVLD++ E
Sbjct: 30  IEGRIIGFDEYMNLVLDDAEE 50


>03_02_0909 -
           12310460-12310759,12310882-12310989,12311099-12311272,
           12311370-12311490,12311569-12311651,12311754-12312420,
           12314073-12314440
          Length = 606

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 280 DGGNSWQQYYNAGIFRQTLVDLEWARNITNAVNVLHVSSI 399
           +GG+ + Q Y  G+FR+ L  + +   I +AV  LH + I
Sbjct: 358 NGGHLFFQLYQQGLFREELARI-YTAEIVSAVAHLHANGI 396


>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 334 KSV*RFQHYNTVATNYHHPNIVTLTVLHSSTDS 236
           KSV +FQ+   + +   HPN+VTL    S T+S
Sbjct: 381 KSVEQFQNEVGILSRLRHPNLVTLFGCTSQTNS 413


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           + + +  K+ + +   + + G L GFD ++N+VL++  E
Sbjct: 84  IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,018
Number of Sequences: 37544
Number of extensions: 215162
Number of successful extensions: 502
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)