Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10458
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    29   3.3  
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    29   4.4  
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    28   7.7  
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167...    28   7.7  

>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 54  SPALVLKVDSGFFFKYTS----LPLRKAYWSNYSSKVRQIEHEIHNVLAL 191
           +P +V+K +   F K+ S         A W+N +SK    EH+ +NV+A+
Sbjct: 262 APVVVVKFNHSMFRKHLSSGQDAKAAPAGWANGASKASSKEHQPYNVIAI 311


>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 523 NSVKKVIKFSTYTLGYHVVLLAFRAGRPRVCVLS 624
           N ++ V+K   YTLGY  VL   R  + ++ ++S
Sbjct: 16  NKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIIS 49


>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 523 NSVKKVIKFSTYTLGYHVVLLAFRAGRPRVCVLS 624
           N ++ V+K   YTLGY  VL   R  + ++ +L+
Sbjct: 57  NKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILA 90


>04_04_0396 +
           24915880-24916222,24916318-24916577,24916689-24916784,
           24916889-24917059,24917262-24917975
          Length = 527

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 36  CIYTFVSPALVLKVDSGFFFKYT 104
           C+Y +VS +L L + +G F+ YT
Sbjct: 258 CVYMYVSLSLSLDIQAGMFYWYT 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,689,514
Number of Sequences: 37544
Number of extensions: 342762
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)