Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10456
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 105 4e-23
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 105 4e-23
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 31 1.2
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 5.0
06_03_1146 - 28004896-28005554,28005664-28005844 28 6.6
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 8.8
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 28 8.8
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 105 bits (252), Expect = 4e-23
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3
Query: 261 DVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGY 440
+ TG++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+
Sbjct: 122 EATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 180
Query: 441 DAESKKFNAEVHRAHIFGLHVAD 509
+ K+ ++++HR +I+G HVAD
Sbjct: 181 KKDEKQLDSDIHRKYIYGGHVAD 203
Score = 100 bits (239), Expect = 1e-21
Identities = 47/83 (56%), Positives = 56/83 (67%)
Frame = +1
Query: 7 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 186
QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40 QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96
Query: 187 YSTGXXXXXXXXXXXXXDTLYTG 255
Y TG D Y G
Sbjct: 97 YCTGLLLARRVLKLRGLDQEYEG 119
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/73 (46%), Positives = 51/73 (69%)
Frame = +2
Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 688
YMRS+ +++ + F+ FS+Y+K G+ AD +EA+YKK H AIRADP+ K KK+ K
Sbjct: 204 YMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPT-MAKSTKKEPATHK 262
Query: 689 RWNKRQLTLAERK 727
R+N ++LT +RK
Sbjct: 263 RYNLKKLTYEQRK 275
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 105 bits (252), Expect = 4e-23
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3
Query: 261 DVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGY 440
+ TG++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+
Sbjct: 122 EATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 180
Query: 441 DAESKKFNAEVHRAHIFGLHVAD 509
+ K+ ++++HR +I+G HVAD
Sbjct: 181 KKDEKQLDSDIHRKYIYGGHVAD 203
Score = 100 bits (239), Expect = 1e-21
Identities = 47/83 (56%), Positives = 56/83 (67%)
Frame = +1
Query: 7 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 186
QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40 QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96
Query: 187 YSTGXXXXXXXXXXXXXDTLYTG 255
Y TG D Y G
Sbjct: 97 YCTGLLLARRVLTLRGLDQEYEG 119
Score = 76.2 bits (179), Expect = 3e-14
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +2
Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 688
YMRS+ +++ + F+ FS+Y+K G+ AD +E++YKK H AIRADP+ K KK+ K
Sbjct: 204 YMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPT-MAKSTKKEPATHK 262
Query: 689 RWNKRQLTLAERK 727
R+N ++LT +RK
Sbjct: 263 RYNLKKLTYEQRK 275
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -3
Query: 412 GTLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVVQCIRCQ 236
GT P++A +P++ +PV V ++ L P + + +SP T V + +R +
Sbjct: 189 GTKGSPASAAAASPRSPSPVAVETPKKTEQQLKVTEPPAEEESSINSPATDVFEVVRTE 247
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 575 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNK 700
LG++ A+EA YK+++E+ A+P KK + +W++
Sbjct: 748 LGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR 789
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 400 PPSTAPFIAPKTRAPVVVRAKPTSK*HLN--APGPLSTGSTLYSSPVTSVV 254
PPS AP A + AP V P+ ++ AP P T ST S P + +
Sbjct: 164 PPSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPSSPPAPAAM 214
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 19 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 141
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 358 PVVVRAKPTSK*HLNAPGPLSTGSTLYSSP 269
P+ RAKP K N P P++ G + S P
Sbjct: 71 PLTTRAKPKPKNRANPPVPIAPGRQILSIP 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,456,221
Number of Sequences: 37544
Number of extensions: 436881
Number of successful extensions: 1114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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