Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10450
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 31 0.83
10_02_0108 - 5361431-5362405 30 1.9
02_05_0053 - 25442186-25443189,25444359-25444914 30 2.5
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 29 3.3
06_03_0743 + 24069752-24070483,24071890-24072345 29 3.3
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 29 3.3
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 4.4
01_03_0003 + 11509530-11512772 29 4.4
02_03_0188 + 16173801-16173910,16174045-16174402 29 5.8
11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549 28 7.7
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 28 7.7
06_02_0295 - 13874200-13874427 28 7.7
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 750 GKNEMPVSSRTIPQSTPHGTYG-TKYRENRSPSADPEVPNDP*HWD 616
G+ E V +T Q+ PH YG T R+ R+ + P N+ WD
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWD 146
>10_02_0108 - 5361431-5362405
Length = 324
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 469 YFTPGQRLLLYKAQSGLAWSTAPISGPG 552
YF PG RL ++ ++SG AW+ P S G
Sbjct: 200 YFMPGPRLCVFSSRSG-AWTVHPYSDAG 226
>02_05_0053 - 25442186-25443189,25444359-25444914
Length = 519
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 643 GSKRSVTLGLSTIRTALLCMESNGRSWYLGAPAQRWEQYSTRGRTVLYKAEAFVQA 476
G + +GL L + + SW G PA +QYS RG+ V + + V A
Sbjct: 351 GEITELAVGLEATGRPFLWVLKDDPSWRAGLPAGYTDQYSGRGKIVAWAPQEDVLA 406
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 635 FGTSGSAEGLRFSLYFVPYVPWGVL*GIVRDDTGISFL 748
+G SG+AEGL S+ F + L G++ D G SFL
Sbjct: 64 WGVSGAAEGLVSSVVFAGMLIGACLGGLISDRYGRSFL 101
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 270 FXGLNYPSSIHPIWRLAPESSPLQSQVLIVSLAPRFERDSDGRYIAHPPCCHPH 109
F GL Y S +HP P S P++ + ++SL P D D + H H H
Sbjct: 39 FSGL-YSSYLHP--PPPPSSPPIREALPLLSLTPSTTHDDDHHHRRHDQDHHHH 89
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 404 SHLEGKAKLASKMLGVLNRAKXTSRLDKGFCFIKHSPASRGVLLPSLGRGSQIPASSI 577
S L G + S+ GV+ R + + L+ +H P+S G+L+ +G + + +
Sbjct: 249 SPLHGSSLKVSRRPGVIGRREPQALLEYSVNSSEHGPSSHGILMSGQNKGFPVRMTKV 306
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 733 GIISNNSSEHSPWNIRYKIQREPKSLRR 650
G+ SN +E + ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 61 SSCISMTCCLLMACIAM-RMTARGMRDISAIRVSLEAW 171
S+C+S+ L +A+ R+T +G +D+ AI+ E W
Sbjct: 928 SNCLSLNSLSLYNMVALKRLTVKGCQDLEAIKGLEECW 965
>02_03_0188 + 16173801-16173910,16174045-16174402
Length = 155
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 313 HGAAIPRSIPATFREYWDT-WGRHFERCPVSESFGRQSQVGVQNAGSPQQSE 465
HG + R PA R++W W RH E PV+ Q G GS Q+S+
Sbjct: 58 HGWRLRR--PARHRQWWRRGWLRHEEAWPVAAVVVPQECRGAIGKGSDQRSD 107
>11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549
Length = 792
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 758 GPMVKTRCRYHLEQFLRALPMEHTVQNTERTEVPPQTQRFQTIRDI 621
G R R H E+ + +LP H + ER PP+ QR +RD+
Sbjct: 296 GTRSSRRSRGHDERSVHSLPERHRERRAERPRSPPR-QRPVDLRDM 340
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 131 IPRAVIRIAM--HAINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 3
IP A++R+++ + + + + D+K GE T++ + V G GI
Sbjct: 297 IPAALVRVSLAGYRLAEHNYFGVDDQKNFGESLTIFYSMVLGQGI 341
>06_02_0295 - 13874200-13874427
Length = 75
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 747 KNEMP-VSSRTIPQSTPHGTYGTKYRENRSPSAD 649
++++P + R +P+ TP+GTYG + RE S +D
Sbjct: 14 QDKLPDIDIRDMPRKTPYGTYGNQ-REESSAISD 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,616,553
Number of Sequences: 37544
Number of extensions: 688724
Number of successful extensions: 2147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2147
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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