Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10447X
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 69 2e-12
07_01_0578 + 4295386-4296489,4297394-4297507 67 7e-12
03_01_0545 - 4086692-4087591 31 0.41
01_06_1508 - 37847007-37847099,37847176-37847398,37847547-378477... 29 2.2
06_01_0017 + 189346-189561,189614-189905,190024-190043 28 2.9
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 28 3.8
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 28 3.8
03_06_0145 - 31973924-31975837 27 5.0
11_06_0056 + 19677556-19677610,19677764-19677984 27 6.6
02_04_0253 + 21310082-21310094,21310606-21311135 27 6.6
02_04_0249 + 21283004-21283016,21283526-21284055 27 6.6
02_04_0247 + 21273978-21273990,21274500-21275029 27 6.6
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 27 6.6
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 27 8.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+ APGGHLG
Sbjct: 192 IRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLG 251
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/54 (40%), Positives = 24/54 (44%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 164
APTK WRRWH ARGH IE +PE PLVV+D
Sbjct: 106 APTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSD 159
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 66.9 bits (156), Expect = 7e-12
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 259 LRAGKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
+R GKGKMRNRR I RKGPLI++ + + +AFRN+PGV+ APGGHLG
Sbjct: 193 IRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLG 252
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKS 170
APTK WR+WH ARGH IE +PELPLV++D +
Sbjct: 107 APTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSA 162
>03_01_0545 - 4086692-4087591
Length = 299
Score = 31.1 bits (67), Expect = 0.41
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = -3
Query: 212 ASGR*QPVWSC*SPGLVRYNQGKLGNLFNNVSSSLNERWDAGSSNRCRQGRSPLSEVDAT 33
+S R +P W+C SP L R+ + L + + L ++ SS CR+ RS +VD
Sbjct: 90 SSARQRPPWTCTSP-LQRHGSTTMQALPYHTRTPLT---NSRSSLSCRRRRSAFWDVDDM 145
Query: 32 VPTPPGLRG 6
+ + G+RG
Sbjct: 146 ITSRCGVRG 154
>01_06_1508 -
37847007-37847099,37847176-37847398,37847547-37847713,
37847791-37847925,37848225-37848390,37849170-37849248,
37849332-37849437,37849522-37849623,37849661-37849761,
37849888-37850068,37850174-37850365
Length = 514
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 2 RPHEALAALAPSRQPPTAESGLGGSGCCYRRP 97
R A LAPS P A +G GG G +R P
Sbjct: 11 RDFAARLRLAPSPASPNAAAGGGGGGIAFRAP 42
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 128 NNVSSSLNERWDAGSSNRCRQGR--SPLSEVDATVPTP 21
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 126 IEKIPELPLVVADKSRRSTRPNRLSS 203
I+ +PE+PL V D S R++R LSS
Sbjct: 431 IDFLPEVPLSVGDDSNRASRSADLSS 456
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 5 PHEALAALAPSRQPPTAESGLGGSGCCYR 91
P A A AP+ P A+ G GG C R
Sbjct: 15 PAAAAGAAAPTTPPAAADGGAGGESCSPR 43
>03_06_0145 - 31973924-31975837
Length = 637
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 402 VQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTRD 250
V++ ++ E HT DV +G++ T + E + +D T AH ST T D
Sbjct: 279 VEVTDVAE-HTADVDDGSASTDDGIAVVEVTDVVDHTATAHVDDGSTSTDD 328
>11_06_0056 + 19677556-19677610,19677764-19677984
Length = 91
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 247 VHLKDIRPCLEAPQEDDSLFGLVDLLDLSATTRGSSGIFSIMCPLA 110
VH DI+PC++ D L+ + ++ S SS + CP A
Sbjct: 44 VHCDDIKPCVQLCATQDPLYPIPSMV-ASIVCHNSSECECMYCPRA 88
>02_04_0253 + 21310082-21310094,21310606-21311135
Length = 180
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 111 ARGHIIEKIPELPLVVADKSRR 176
AR +++EK+ ELP VAD RR
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0249 + 21283004-21283016,21283526-21284055
Length = 180
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 111 ARGHIIEKIPELPLVVADKSRR 176
AR +++EK+ ELP VAD RR
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0247 + 21273978-21273990,21274500-21275029
Length = 180
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 111 ARGHIIEKIPELPLVVADKSRR 176
AR +++EK+ ELP VAD RR
Sbjct: 14 ARKYVLEKVDELPGEVADMVRR 35
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 111 ARGHIIEKIPELPLVVADKSRR 176
AR +++EK+ ELP VAD RR
Sbjct: 252 ARKYVLEKVDELPGEVADMVRR 273
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 144 LPLVVADKSRRSTRPNRLSSS*GASRHGLISLRCTS 251
LP VVA R+S P+R SS + H + L +S
Sbjct: 17 LPGVVAKSCRKSAVPHRFQSSCNGAAHSALDLFVSS 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,817
Number of Sequences: 37544
Number of extensions: 255082
Number of successful extensions: 958
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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