Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10445
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    28   3.5  
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    28   4.6  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    27   6.0  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    27   8.0  

>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 259 DSGAEDISSSGSDCSTGTRG 318
           D+GA D++SSGS+CS  +RG
Sbjct: 179 DAGA-DVASSGSECSDASRG 197


>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 51  TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDE 218
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDE 713


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 21  HDVFASQFFHTYSLPVNSSAADVTAELTSD 110
           HD F   + H  S+P+    A V AE++ D
Sbjct: 809 HDSFLRSYLHLTSMPLPCEGAAVPAEISKD 838


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 112 PSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLAS 2
           P E+   + SAA  F  R+ V K+W+ +T  SS++ +
Sbjct: 403 PVELFIGILSAANHFAERMAVRKSWMIDTRKSSNVVA 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,044,395
Number of Sequences: 37544
Number of extensions: 164421
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)