Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10436
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 87 2e-17
01_06_0442 + 29425199-29425274,29425389-29425429,29426097-294261... 80 2e-15
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 79 4e-15
02_02_0448 + 10370493-10370568,10370687-10370727,10372372-103724... 76 3e-14
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875... 75 6e-14
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 69 3e-12
10_08_0365 + 17224777-17224852,17224949-17224989,17225175-172252... 53 2e-07
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 34 0.099
04_04_0443 - 25253425-25253679,25254072-25254131,25254259-252543... 29 2.8
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054... 29 2.8
11_01_0426 + 3271324-3271377,3272114-3272227,3272475-3272588,327... 29 3.7
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 29 3.7
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 29 4.9
05_02_0056 - 6191998-6192057,6192132-6192320,6192492-6192649,619... 28 6.5
01_06_0524 - 30011038-30011230,30012959-30013236 28 6.5
08_02_0348 - 16075103-16075492,16076170-16076469 28 8.6
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 28 8.6
>04_04_0503 -
25701050-25701343,25701431-25701528,25701629-25701689,
25701772-25701842,25701922-25702048,25702160-25702244,
25702346-25702409,25702732-25702793,25703214-25703284,
25703700-25703795,25703960-25704108,25704196-25704265,
25704483-25704523,25704668-25704743
Length = 454
Score = 86.6 bits (205), Expect = 2e-17
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 NHPIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGGLRDNH 181
++P EF Y YCR LRFE++PDY++L++LFR LF R+G+ DYVFDW MLK+ +RDN
Sbjct: 243 SYPSEFVSYFHYCRSLRFEDKPDYSYLKKLFRDLFIREGYQLDYVFDWTMLKYPQIRDNK 302
Query: 182 -QTSGIDRALRRLEQNQEQENTAATAASPVMQWQQFRNGGEERYR*LHADNISLKA 346
+ SG L + E T A + RNG ++R L +S KA
Sbjct: 303 LRPSGKTSGLVG-RSAERTERTTGEALARRTGSGSGRNGEPTKHRTLLDSLMSSKA 357
>01_06_0442 +
29425199-29425274,29425389-29425429,29426097-29426166,
29426251-29426399,29426654-29426749,29426850-29426920,
29427247-29427308,29427490-29427553,29427630-29427714,
29427793-29427919,29428092-29428174,29428271-29428331,
29428534-29428670,29428984-29429280
Length = 472
Score = 79.8 bits (188), Expect = 2e-15
Identities = 30/52 (57%), Positives = 42/52 (80%)
Frame = +2
Query: 5 HPIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKF 160
+P EF Y YCR LRF+++PDY++L++LFR LF R+GF +DYVFDW +LK+
Sbjct: 244 YPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTILKY 295
>02_05_1170 +
34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 79.0 bits (186), Expect = 4e-15
Identities = 30/53 (56%), Positives = 43/53 (81%)
Frame = +2
Query: 2 NHPIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKF 160
++P EF Y YCR LRFE++PDY++L++LFR LF R+G+ +DYVFDW +LK+
Sbjct: 243 SYPSEFISYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKY 295
>02_02_0448 +
10370493-10370568,10370687-10370727,10372372-10372441,
10372530-10372678,10373177-10373272,10373347-10373417,
10373547-10373608,10373797-10373860,10374107-10374191,
10374281-10374407,10374494-10374567,10374804-10374858,
10374961-10375085,10375297-10375452
Length = 416
Score = 75.8 bits (178), Expect = 3e-14
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 2 NHPIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLK 157
+HP+EF Y YC L F++RPDY LR+LFR L R+G+ YD+VFDW +LK
Sbjct: 243 SHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRDLADREGYQYDHVFDWTLLK 294
>02_04_0657 +
24786717-24786924,24786925-24786965,24787379-24787521,
24787597-24787774,24788054-24788123,24788197-24788345,
24788491-24788586,24789213-24789283,24789879-24789940,
24790175-24790238,24790326-24790410,24790515-24790641,
24790714-24790775,24790863-24790923,24790987-24791147,
24791355-24791648
Length = 623
Score = 74.9 bits (176), Expect = 6e-14
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 NHPIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNM--LKFGGLRD 175
++P EF Y YCR LRFE++PDY++L++LFR LF R+G+ DY+FDW + LR
Sbjct: 394 SYPTEFISYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQLDYIFDWTKQGSESNRLRS 453
Query: 176 NHQTSGI 196
+ +TSG+
Sbjct: 454 SGRTSGL 460
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 69.3 bits (162), Expect = 3e-12
Identities = 26/51 (50%), Positives = 37/51 (72%)
Frame = +2
Query: 8 PIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKF 160
P+EF Y YC L F++RPDYA +++L R LF RQ + +DYVFDW +L++
Sbjct: 245 PVEFASYFHYCHSLTFDQRPDYAFVKRLLRDLFTRQVYEFDYVFDWTVLRY 295
>10_08_0365 +
17224777-17224852,17224949-17224989,17225175-17225244,
17225338-17225486,17225940-17226035,17226481-17226551,
17227077-17227138,17227311-17227374,17227463-17227547,
17227631-17227757,17228241-17228374,17228808-17229122
Length = 429
Score = 53.2 bits (122), Expect = 2e-07
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +2
Query: 2 NHPIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQ 115
++P EF Y YCR LRFE++PDY++L++LFR +F R+
Sbjct: 243 SYPSEFTSYFHYCRSLRFEDKPDYSYLKKLFRDVFTRE 280
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 34.3 bits (75), Expect = 0.099
Identities = 28/90 (31%), Positives = 38/90 (42%)
Frame = +2
Query: 8 PIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGGLRDNHQT 187
P F+L+L+ +RF+E P+YA L LF L Q ++ G Q
Sbjct: 384 PPPFKLFLESVTNMRFDEEPNYAKLISLFDELIEPQHL--------RPIRIDGALKAGQK 435
Query: 188 SGIDRALRRLEQNQEQENTAATAASPVMQW 277
G R L LE++ EQ SP QW
Sbjct: 436 RG--RLLVNLEED-EQPKKKVRLGSPANQW 462
>04_04_0443 -
25253425-25253679,25254072-25254131,25254259-25254365,
25256594-25256667,25256865-25256998,25257233-25257304,
25257453-25257522,25257602-25257675,25258403-25258574,
25258910-25258934,25259358-25259517,25259730-25259788,
25259908-25260079
Length = 477
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -3
Query: 325 SVKSAVSLLTAIPKLLPLHYWAGRCRSGIFLFLILFK-TSKSAINTTCLMVITQS-SKL* 152
S+ +A L A PK P H CRSG+ L LI + + T L ITQ+ + +
Sbjct: 335 SIYAADKLTIASPK--PFHEQCKHCRSGLLLLLITHPIIHEDILIKTTLAAITQNITCVN 392
Query: 151 HVPIKHVVICKSLPVEEGAKQLTQM 77
+ ++H SL V + ++ M
Sbjct: 393 QMSLEHSESLSSLQVAQAQTRILCM 417
>01_06_0677 -
31104736-31104897,31105046-31105234,31105313-31105470,
31105558-31105648,31105787-31105961,31106065-31106204,
31106293-31106511,31106589-31106718,31107163-31107229,
31107347-31107441,31107535-31107606,31107681-31107736,
31107995-31108060,31108151-31108264,31108787-31109092
Length = 679
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/90 (24%), Positives = 34/90 (37%)
Frame = +2
Query: 8 PIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGGLRDNHQT 187
P F+ +++Y L+F+E P+YA LF T+ D + G +
Sbjct: 327 PQPFREFVEYVVNLKFDEEPNYAKCISLFDTVVGPNP-------DIRPINTDGAQKLIHL 379
Query: 188 SGIDRALRRLEQNQEQENTAATAASPVMQW 277
G R +E+ EQ P QW
Sbjct: 380 VGQKRGRLLMEETDEQPKKKIRMGMPATQW 409
>11_01_0426 +
3271324-3271377,3272114-3272227,3272475-3272588,
3272677-3272834,3273067-3273157,3273668-3273778
Length = 213
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +3
Query: 99 PSSTGKDLHMTTCLIGTC*SLEDCVITIKQVVLIALLD 212
P +TG+ +H+T +I +C S++ V+ +++ + +A D
Sbjct: 33 PENTGEHVHLTKEIIASCESIQWQVVELEKAISVAERD 70
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 8 PIEFQLYLKYCRRLRFEERPDYAHLRQLFRTL 103
P F+ +L+ ++F+E P+YA L LF +L
Sbjct: 401 PPPFKQFLEVVTNMKFDEEPNYAKLISLFDSL 432
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 298 TAIPKLLPLHYWAGRCRSGIFLFLILFKTSKSAINTTCL 182
T+ P L L+ W G + FLI ++TS+ +N CL
Sbjct: 509 TSFPYLEVLNLWPGETCHFMGRFLITWRTSEVVVNGMCL 547
>05_02_0056 -
6191998-6192057,6192132-6192320,6192492-6192649,
6193714-6193804,6193984-6194158,6194227-6194369,
6194592-6194810,6194899-6195028,6195127-6195193,
6195263-6195357,6195454-6195525,6195613-6195668,
6196453-6196455,6197948-6198017,6198173-6198246,
6198334-6198468,6200273-6200362
Length = 608
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 8 PIEFQLYLKYCRRLRFEERPDYAHLRQLF 94
P F+ +++Y L+F+E P+YA LF
Sbjct: 289 PQPFRQFIEYVVNLKFDEEPNYAKCISLF 317
>01_06_0524 - 30011038-30011230,30012959-30013236
Length = 156
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 381 CDTEHTGHKYQRAFREMLSA*SQRYLSSPPFRNCC 277
C+ + K+ RAF E L ++RY+ PP C
Sbjct: 45 CEATRSAAKHGRAFHEELMERNKRYVIDPPTIQTC 79
>08_02_0348 - 16075103-16075492,16076170-16076469
Length = 229
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 68 DYAHLRQLFRTLFHRQGFTYDYVFDWNML---KFGGLRDNHQTSGIDRALRRLEQNQEQE 238
+YAH R+ L + G ++ W + +F + + G R R + +N+++
Sbjct: 65 EYAHTREYSPELLRKIGMDVEFCAIWKAVGWQRFAVTIEESRAGGAYRETRNMTRNEQES 124
Query: 239 NTAAT 253
++++T
Sbjct: 125 SSSST 129
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 248 QRYFLVPDFVQDV*ERDQYHLFDGYHAVLQTLTCSNQTRSHM*ILAGGRGCE 93
Q ++ P+FV++ E Q H+ DG H VL++L N + + A C+
Sbjct: 989 QNKYVRPNFVREN-EASQIHIKDGRHPVLESLLGVNFVPNDTELHANSEYCQ 1039
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,968,618
Number of Sequences: 37544
Number of extensions: 347131
Number of successful extensions: 890
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -