Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10422
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 136 2e-32
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 136 2e-32
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 96 2e-20
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 81 1e-15
02_02_0196 + 7685933-7685961,7686086-7686284 50 2e-06
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.27
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.48
12_01_0263 + 1925924-1926319,1926565-1927143 31 1.1
11_01_0265 + 2007195-2007590,2007836-2008414 31 1.1
08_02_0286 - 15326876-15328135 29 3.3
11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887 28 5.9
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 136 bits (328), Expect = 2e-32
Identities = 64/84 (76%), Positives = 71/84 (84%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL R G+ VA
Sbjct: 118 YDPSTGIYGMDFYVVLERAGYRVA 141
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +1
Query: 487 ARFQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
A ++ + RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 136 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 136 bits (328), Expect = 2e-32
Identities = 64/84 (76%), Positives = 71/84 (84%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL R G+ VA
Sbjct: 118 YDPSTGIYGMDFYVVLERAGYRVA 141
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +1
Query: 487 ARFQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
A ++ + RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 136 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 171
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/60 (76%), Positives = 51/60 (85%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 433
+FGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 84 SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 83
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +3
Query: 108 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 254
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVR
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVR 57
Score = 72.5 bits (170), Expect = 3e-13
Identities = 43/86 (50%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 AFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNF--SATGNFGFGIQEHIDLG 427
+FGIRRNEKIA + TVRG KA ++LE GLK+ DN S T + +
Sbjct: 58 SFGIRRNEKIACYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQC 114
Query: 428 IKYDPSIGIYGLDFYVVLGRPGFNVA 505
+YDPS GIYG+DFYVVL R G+ VA
Sbjct: 115 FRYDPSTGIYGMDFYVVLERAGYRVA 140
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +1
Query: 487 ARFQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
A ++ + RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 135 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 170
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +1
Query: 487 ARFQRSTRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 594
A ++ + RRR +VG HR+TKEDAMKWFQ KY+G
Sbjct: 29 AGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEG 64
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 434 YDPSIGIYGLDFYVVLGRPGFNVA 505
YDPS GIYG+DFYVVL R G+ VA
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVA 34
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 275 EKIAVHCTVRGAKAEEILERGLK 343
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 275 EKIAVHCTVRGAKAEEILERGLK 343
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>12_01_0263 + 1925924-1926319,1926565-1927143
Length = 324
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 218 TACIFQG*VYSAAFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFG 397
T+C+ + V S AF I E I HC + +KA++ L L+V+E ++ G G
Sbjct: 255 TSCLKEVHVISTAFRIENIEAIMTHCQSQESKAKDQL-LALQVKEQMHSCESKEIHGLLG 313
Query: 398 FGI 406
GI
Sbjct: 314 SGI 316
>11_01_0265 + 2007195-2007590,2007836-2008414
Length = 324
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 218 TACIFQG*VYSAAFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFG 397
T+C+ + V S AF I E I HC + +KA++ L L+V+E ++ G G
Sbjct: 255 TSCLKEVHVISTAFRIENIEAIMTHCQSQESKAKDQL-LALQVKEQMHSCESKEIHGLLG 313
Query: 398 FGI 406
GI
Sbjct: 314 SGI 316
>08_02_0286 - 15326876-15328135
Length = 419
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 251 AAFGIR-RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 367
AA G+ R +++ V C V A A+E+L RG + + ELRR
Sbjct: 140 AASGVLLRGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>11_06_0280 + 21875166-21875470,21876450-21876645,21878270-21878887
Length = 372
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 347 REYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHEG 514
RE EL+R S+ G +E +D G+ DP+ G Y Y + RPG + ++G
Sbjct: 54 REDELKRRWISSV--LGMAGRE-VDAGV-VDPADGFYYRSVYPSMTRPGISATYKG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,733
Number of Sequences: 37544
Number of extensions: 343192
Number of successful extensions: 954
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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