Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10399
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555...    52   4e-07
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459...    31   0.53 
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821...    31   0.93 
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     29   3.8  
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764...    29   3.8  
03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731...    27   8.7  

>02_05_1080 -
           33955034-33955117,33955199-33955300,33955381-33955510,
           33955674-33955783,33955827-33955950,33956042-33956136,
           33956205-33956300,33956419-33956551,33956668-33956759,
           33956844-33956948,33957201-33957335,33957421-33957526,
           33957621-33957748,33957860-33957958,33958049-33958228,
           33958303-33958446,33958533-33958647,33958739-33958905
          Length = 714

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/91 (32%), Positives = 51/91 (56%)
 Frame = +3

Query: 237 VATVCDEAHVNEALRLFQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGS 416
           + +V    HV EA RLF VST+DAA +G +      + +  +E + + E Q+KRR  +GS
Sbjct: 610 LTSVATPEHVEEAFRLFNVSTVDAARSG-INEHLNLSPDIANE-IKQAEAQIKRRMGIGS 667

Query: 417 QVSEQTIIQDFLRQKYPERAILKVIHMMIRR 509
            +SE+ +I +  R    E  + + + +M +R
Sbjct: 668 HISERRLIDELNRMGMNESIVRRALLIMHQR 698



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +1

Query: 112 YVLMRTGALQHERQADKRLYIPITVRQLEAIVHISESLAKMQLQPFAT 255
           + L  T   Q   +  +   IPITVRQLEAI+ +SESLAKM+L   AT
Sbjct: 568 FSLSLTKMRQQAHETGRAAAIPITVRQLEAIIRLSESLAKMRLTSVAT 615


>05_05_0138 +
           22644263-22644460,22644617-22644711,22645786-22645949,
           22646725-22646970,22647600-22647944,22648516-22648586,
           22648676-22648794,22650508-22650637,22650806-22650857,
           22650974-22651136,22651244-22651418,22651772-22651942,
           22652275-22652388,22652559-22652609
          Length = 697

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 136 LQHERQADKRLYIPITVRQLEAIVHISESLAKMQLQPFAT 255
           L   +Q+D     PIT RQLE++V ++E+ A++ L+   T
Sbjct: 542 LDLRKQSDSADGTPITARQLESLVRLAEARARVDLREEVT 581


>05_03_0079 +
           8212648-8212724,8212844-8212993,8213211-8213351,
           8213658-8213820,8213901-8214094,8214174-8214369,
           8214462-8214539,8214933-8215162,8215574-8215688,
           8215878-8215952,8216032-8216172,8216309-8216512,
           8216586-8216747,8216787-8216794,8217099-8217223,
           8217316-8217438,8218177-8218307,8218527-8218658
          Length = 814

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +1

Query: 112 YVLMRTGALQHERQADKRLYIPITVRQLEAIVHISESLAKMQLQ 243
           YV +R G    +     R+   +TVRQLEA++ +SE++A+  L+
Sbjct: 601 YVTLRRG----DSTPGTRVAYRMTVRQLEALIRLSEAIARSHLE 640


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 351 EEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQ 443
           ++DHE  + +E+  ++   VGS++ EQ +I+
Sbjct: 477 QDDHEFTSAIEETKRKIAQVGSEIGEQFLIE 507


>05_05_0208 +
           23275931-23275996,23276084-23276196,23276279-23276459,
           23276590-23276674,23276974-23277104,23277194-23277432,
           23277512-23277748,23277838-23277992,23278039-23278271,
           23278359-23278521,23278613-23278818,23278960-23279019,
           23279106-23279198,23279406-23279569,23280070-23280138,
           23280241-23280382,23280490-23280546
          Length = 797

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 172 IPITVRQLEAIVHISESLAKMQLQ 243
           +PIT R LE I+ +S + AKM+L+
Sbjct: 629 LPITARTLETIIRLSTAHAKMKLR 652


>03_06_0627 -
           35172246-35172349,35172903-35173005,35173107-35173190,
           35173504-35173599,35173686-35173736,35173805-35173945,
           35174098-35174154,35175089-35175163,35176255-35176527,
           35176608-35176667,35176754-35176846,35177196-35177348
          Length = 429

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 381 EKQLKRRFAVGSQVSEQTIIQDFLRQK--YPERAILKVIHMMIRRGSFSIDYSEKC 542
           EK  +R    GS      II   +R +   P++++  +   ++  GSF + Y  KC
Sbjct: 50  EKNTERDVVDGSSAEAGHIIATTIRGRNGLPKQSVTYIAEHVVGTGSFGVVYQAKC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,054
Number of Sequences: 37544
Number of extensions: 176784
Number of successful extensions: 418
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)