Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10389
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0032 + 31182115-31182390,31182801-31183459,31183597-311837...    31   0.80 
01_05_0091 + 18048595-18050559                                         31   1.4  
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    29   5.7  
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672     28   7.5  
01_05_0373 - 21551674-21552867                                         28   9.9  

>03_06_0032 +
           31182115-31182390,31182801-31183459,31183597-31183740,
           31184025-31184061
          Length = 371

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 356 SPQTSTAAYRPPPSL---ATKTNPDVHCGTRPLPSLAQRPVLHCLHTADPREP 207
           +PQ S A Y PPPS    AT  +P +  G  P P     P LH +    P+ P
Sbjct: 87  APQFSMANYAPPPSYQHPATLVSPPLAAGLHPYP-----PYLHGVDAPPPQWP 134


>01_05_0091 + 18048595-18050559
          Length = 654

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 51  IGSCSILWETYPRYVFRYAVANQERSGPSGYPFHEQCVLLTATSTKWTDDLLR 209
           +GS S+L E   R+   Y    +   GP  YP H    LL A+S    DD L+
Sbjct: 440 LGSSSLLSEHRKRHGLYYLPTGKAEDGPVDYP-HANDPLLPASSESALDDKLK 491


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -2

Query: 712 WSNEDVSQNLSPDRKRDPLRRSNEKLS 632
           ++++ +SQNL+  RKR P+R+ + KLS
Sbjct: 354 YTSQALSQNLAGLRKRSPIRKISTKLS 380


>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
          Length = 641

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 475 SNIHAYEGQDSLILMISTFAFTLGYLRIASACSDTG*CPSDIDKFIP 615
           + +  +  +DS++   ST  + +  LR+   C+D   CP D+  ++P
Sbjct: 320 NKLREFGDRDSILRNYSTVLYFI--LRLRQLCNDIALCPLDLKSWLP 364


>01_05_0373 - 21551674-21552867
          Length = 397

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 521 YQHSLLH*GI*ELHRPVLILVSVHRILINSFR 616
           Y +  +  GI + HR   + V++HR L N+FR
Sbjct: 353 YDYMRIRTGIDDYHRQRKLAVTLHRFLYNNFR 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,086,256
Number of Sequences: 37544
Number of extensions: 496692
Number of successful extensions: 1472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)