Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30172
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141...    66   3e-11
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907...    45   7e-05
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    45   7e-05
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310...    41   9e-04
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367...    40   0.002

>05_01_0195 -
           1409820-1409966,1410304-1410360,1410774-1410828,
           1410902-1411002,1411051-1411205,1411395-1411459,
           1411545-1411595,1411817-1411893,1412153-1412262,
           1412355-1412403,1412528-1412572,1412689-1412813,
           1413087-1413228,1413336-1413446
          Length = 429

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 28/59 (47%), Positives = 43/59 (72%)
 Frame = +1

Query: 88  ASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIISREILPQQ 264
           A+E A + A  A+Q  GGNG+  EYP  +L+RDAK+++I  GTS+I+R+II RE+  ++
Sbjct: 371 AAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE 429


>06_02_0285 +
           13789900-13790071,13790407-13790525,13790642-13790751,
           13790887-13791046,13791407-13791483,13792299-13792470,
           13792580-13792672,13793617-13793733
          Length = 339

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +1

Query: 10  IAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDA 189
           + W R   + D G+  T  AS+ K   ++ A +      ++ GGNG  T++ V K   D 
Sbjct: 248 LGW-RLCKLHDSGRMTTGQASLGKAWITKQARETVALGRELLGGNGIVTDFHVGKAFCDM 306

Query: 190 KIYQIYEGTSQIQRLIISREILP-QQLKPTDVL 285
           +    YEG+ ++  L+ +REI     ++PT  L
Sbjct: 307 ESIYTYEGSYEVNVLVAAREITGIASIRPTSRL 339


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +1

Query: 40  DHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTS 219
           D G+  T  AS+ K   ++ A +      ++ GGNG  T++ V K   D +    YEG+ 
Sbjct: 371 DSGRMTTGQASLGKAWITKKARETVALGRELLGGNGIVTDFHVGKAFCDMESLYTYEGSY 430

Query: 220 QIQRLIISREI 252
           ++  LI++R+I
Sbjct: 431 EVNALIVARDI 441


>01_01_0413 -
           3107668-3107796,3107879-3107971,3108082-3108253,
           3108341-3108417,3108514-3108673,3108766-3108875,
           3109384-3109443,3109545-3109618,3109748-3109871,
           3110795-3110872,3111169-3111275,3112572-3112673,
           3112800-3112815
          Length = 433

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = +1

Query: 10  IAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDA 189
           + W R   + + G+     AS+ K   S +A +  +   ++ GGNG   ++ V K   D 
Sbjct: 338 VGW-RLCKLYESGKMTPGHASLGKGWTSRMAREVVSLGRELLGGNGILADFLVAKAFCDL 396

Query: 190 KIYQIYEGTSQIQRLIISREI 252
           +    YEGT  I  L+  REI
Sbjct: 397 EPIYSYEGTYDINSLVTGREI 417


>05_01_0464 -
           3670397-3670525,3671152-3671244,3671366-3671537,
           3671626-3671702,3671819-3671978,3672104-3672213,
           3672321-3672380,3672492-3672629,3672922-3672999,
           3673227-3673333,3674506-3674598,3674708-3674723
          Length = 410

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = +1

Query: 10  IAWQRAAWMVDHGQKNTVMASVAKCHASEIANKAATDAVQVFGGNGFNTEYPVEKLMRDA 189
           + W R   + + G+     AS+ K   S+ A +  +   ++ GGNG   ++ V K   D 
Sbjct: 315 VGW-RLCKLYESGKMTPGHASLGKAWTSKKAREVVSLGRELLGGNGILADFLVAKAFCDL 373

Query: 190 KIYQIYEGTSQIQRLIISREI 252
           +    YEGT  I  L+  REI
Sbjct: 374 EPIFSYEGTYDINSLVTGREI 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,444,625
Number of Sequences: 37544
Number of extensions: 388207
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)