Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30142
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 138 4e-33
04_01_0103 + 1082077-1082167,1083037-1085477 136 1e-32
01_06_0662 + 30987187-30987277,30987825-30990214 128 3e-30
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 109 1e-24
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 108 3e-24
03_05_0511 + 25056018-25059107 84 9e-17
02_04_0148 - 20198407-20201424 75 3e-14
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 44 9e-05
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 40 0.001
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 30 1.2
11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629,397... 29 3.8
03_05_0457 - 24506420-24506974,24507142-24508329,24509262-245093... 28 6.6
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 8.7
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 27 8.7
04_04_0503 - 25701050-25701343,25701431-25701528,25701629-257016... 27 8.7
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 138 bits (333), Expect = 4e-33
Identities = 61/101 (60%), Positives = 77/101 (76%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR
Sbjct: 727 EPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLR 786
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASPTTLYRKRERGK 304
+ T GQAFPQCVFDHW ++ DP + + +TL + + K
Sbjct: 787 AATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRK 827
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 247 PVRPQSKPYNVVQETRKRKGLKE 315
P+ S+ +VQ+ RKRKGLKE
Sbjct: 809 PLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 136 bits (329), Expect = 1e-32
Identities = 63/105 (60%), Positives = 79/105 (75%), Gaps = 3/105 (2%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR
Sbjct: 727 EPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLR 786
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASPTTL---YRKRERGKD 307
+ T GQAFPQCVFDHW ++ DP ++ + L RKR+ K+
Sbjct: 787 AATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDIRKRKGLKE 831
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 128 bits (309), Expect = 3e-30
Identities = 61/101 (60%), Positives = 73/101 (72%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ LR
Sbjct: 725 EPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLR 784
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASPTTLYRKRERGK 304
+ T GQAFP VFDHW++L DP + TL RG+
Sbjct: 785 AATSGQAFPLFVFDHWEMLSVDPLEPGTRQLTLSWISARGR 825
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 109 bits (263), Expect = 1e-24
Identities = 51/85 (60%), Positives = 60/85 (70%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVY EIQ P V IY VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR
Sbjct: 853 EPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLR 912
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCD 256
+T GQAF VFDHW ++PGDP D
Sbjct: 913 YHTQGQAFCLSVFDHWAIVPGDPLD 937
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 108 bits (260), Expect = 3e-24
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP+Y +IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT LR
Sbjct: 737 EPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLR 796
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPC---DLRASPTTLYRKRERGKD 307
+ T GQAFPQC+F HWQ + DP A T RKR+ KD
Sbjct: 797 AETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 83.8 bits (198), Expect = 9e-17
Identities = 38/83 (45%), Positives = 49/83 (59%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
E +Y CE+ P +G Y VL+R+R V +E GT +F V AYLPV ES GF+ +LR
Sbjct: 890 EAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVAESVGFSNELR 949
Query: 182 SNTGGQAFPQCVFDHWQVLPGDP 250
S T G A V HW+ +P DP
Sbjct: 950 SVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 75.4 bits (177), Expect = 3e-14
Identities = 35/83 (42%), Positives = 45/83 (54%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP+Y CE+ P +G +Y VL R V +E GT +F V AYL V ES F+ LR
Sbjct: 866 EPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAESSEFSKKLR 925
Query: 182 SNTGGQAFPQCVFDHWQVLPGDP 250
+ T G A F HW+ +P DP
Sbjct: 926 NATAGAASALLAFSHWETVPQDP 948
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP+ E+ PE +G + G LN RRG V G + +V A++P+ E F + + LR
Sbjct: 653 EPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAEMFQYVSTLR 711
Query: 182 SNTGGQAFPQCVFDHWQVLP 241
T G+A + V+P
Sbjct: 712 GMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPV E++ P G + G +N+R+G + Q +V ++P+N FG++ LR
Sbjct: 675 EPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTALR 732
Query: 182 SNTGGQ 199
S T G+
Sbjct: 733 SMTQGK 738
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 271 RACSEVARVSREDLPMVEYALREGLS 194
R C++VAR S++D P+ YA GL+
Sbjct: 316 RLCADVARCSKDDYPLAHYAGMYGLA 341
>11_01_0513 -
3977031-3977328,3977425-3977469,3977553-3977629,
3977734-3977850,3978012-3978188,3978282-3978379,
3978478-3978544,3978651-3978741,3978847-3978939,
3979049-3979380,3979938-3980189
Length = 548
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 183 PTPADRPSRSAYSTIGRSSLETRATSEQALQR-CTGNEKEERIE--GRSPRLNSIFGQIV 353
P PA + ++A G+ + TS + + +GN E+ E +SP L ++ G I
Sbjct: 68 PPPASK--KTALLDKGKEKVSEMDTSVRRTSKGISGNPSEDSNEPVAKSPTLKTVIGSIR 125
Query: 354 NYIVKAN*KNVSI 392
NYI + + I
Sbjct: 126 NYIATKKGRKIKI 138
>03_05_0457 -
24506420-24506974,24507142-24508329,24509262-24509331,
24510627-24510704,24511088-24511149
Length = 650
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 574 ITVQVDHVHLHNNVIPKKRYSLFIIYLVEC 485
I +Q+DH L + ++P Y++ +Y VEC
Sbjct: 351 IGMQLDHATLEDLLLPNFSYTMETLYNVEC 380
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 321 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSTTHVPHHVKA 452
PR + +++NYIV + K+ + S +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 156 RSVLLPICVPTPADRPSRSAYSTIGRSSLETRATSEQAL---QRCTGNEKEERIEGRSPR 326
+S+LLP A P R GR+S+ RA++ A +R T K I G
Sbjct: 2 QSLLLPTFAAASAAPPRRGRVPPAGRASVSVRASASAAAVAPRRETDPRKRVVITGMG-- 59
Query: 327 LNSIFGQIVN 356
L S+FG V+
Sbjct: 60 LVSVFGNDVD 69
>04_04_0503 -
25701050-25701343,25701431-25701528,25701629-25701689,
25701772-25701842,25701922-25702048,25702160-25702244,
25702346-25702409,25702732-25702793,25703214-25703284,
25703700-25703795,25703960-25704108,25704196-25704265,
25704483-25704523,25704668-25704743
Length = 454
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 198 RPSRSAYSTIGRSSLETRATSEQALQRCTGN 290
RPS +GRS+ T T+ +AL R TG+
Sbjct: 304 RPSGKTSGLVGRSAERTERTTGEALARRTGS 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,491
Number of Sequences: 37544
Number of extensions: 324641
Number of successful extensions: 894
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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