Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30113
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 109 2e-24
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 30 2.1
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 29 3.6
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386 29 3.6
06_03_0702 - 23692525-23692613,23692711-23693473 29 4.8
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 28 6.4
09_02_0181 - 5425833-5426527,5426667-5429397 28 8.4
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 28 8.4
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 109 bits (262), Expect = 2e-24
Identities = 56/118 (47%), Positives = 70/118 (59%)
Frame = +3
Query: 258 YESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQCY 437
+E+QRQGRISFY+T++GEE I+I SA+AL+ D+V QYRE GV L+RG T+ NQC+
Sbjct: 188 FEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCF 247
Query: 438 GNCEDPGKRRQMPVHYGSKHHNMVQYLVH*EHXCPRLLEPLMPTKEFPYNDRCVICYF 611
GN D GK RQMP+HYGS N P + K D C I YF
Sbjct: 248 GNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLK-MDKKDACAITYF 304
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 58 EFPGARAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQL 237
+FPG + +V+EM F E+ + I YRV+D++G+ I + + K + MY M L
Sbjct: 121 DFPGGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATL 180
Query: 238 SHMDKIYM--NHKDKVAFH 288
MD I+ + +++F+
Sbjct: 181 QVMDTIFFEAQRQGRISFY 199
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +2
Query: 509 TISSPLGTXMPQAVGAAYAYKXXXXXXXXXXXXXSVTGAASEGDAHSAFNFAGYVRLSCY 688
T+SSP+ T +P AVGAAY+ K G SEGD H+A NFA +
Sbjct: 272 TVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGD--GGTSEGDFHAALNFAAVMEAPVI 329
Query: 689 *CCAGN 706
C N
Sbjct: 330 FFCRNN 335
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +3
Query: 306 GEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQCYGNCEDPGKRRQMPVHY 485
G+E + G L+ D V S YR+ L +G+ ++ + +G + + +H
Sbjct: 113 GQEAVSTGFIKLLNQADCVVSTYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHM 172
Query: 486 GSKHHNMV 509
S+ HN++
Sbjct: 173 FSEPHNLL 180
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +3
Query: 306 GEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQCYGNCEDPGKRRQMPVHY 485
G+E + +G +A++ D + + YR+ +L RG + + G + + +H+
Sbjct: 95 GQEAVAVGMEAAITRSDSIITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHF 154
Query: 486 GSKHHN 503
K N
Sbjct: 155 YKKDAN 160
>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
Length = 837
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 510 VPCCGACFRNGPASVSFSRDPRSFRNTGSQV 418
VP G C G S+ SRD R FR+T QV
Sbjct: 171 VPTEGPCNGKGCCSIKLSRDLRGFRSTLVQV 201
>06_03_0702 - 23692525-23692613,23692711-23693473
Length = 283
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 438 GNCEDPGKRRQMPVHYGSKHHNMVQYLV 521
G C PGK R P G +HH V LV
Sbjct: 64 GVCLPPGKMRSPPPDLGREHHASVDVLV 91
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 97 KFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKIY 258
K NE+S E PI + D+ ++ +++ ++NM+ L HM K Y
Sbjct: 547 KPINESSGEGFPIIQYADDTLILLKTSQKEVFCFKAILNMFAQSTGLKHMVKFY 600
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 110 SLKNFISLTYGALAPGNSAILPPPFCAVSGLVRVD 6
+LKNF +LTY L + +P CA++ L +D
Sbjct: 551 TLKNFTALTYLDLCSNSLTNIPGEICALANLEYLD 585
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 306 GEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQCYG 440
G+E + +G +A + D + + YR+ +L RG + L + G
Sbjct: 103 GQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMG 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,615,847
Number of Sequences: 37544
Number of extensions: 409764
Number of successful extensions: 962
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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