Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30098
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    30   2.1  
07_01_0130 - 963856-965454                                             29   2.7  
11_01_0627 - 5047751-5047758,5047799-5048015,5048759-5049646           28   6.3  
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    28   8.4  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    28   8.4  

>10_08_0762 - 20410681-20411834,20411999-20412098,20412200-20412298,
            20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 197  HIASIVTVDYPLFRGRIRQWGIYPPVWAHKKLTTSFFY 310
            HI +  + + PL    + ++ I+PP W H  L  +FF+
Sbjct: 951  HICTAGSQETPLISSSVHRYDIFPPKWEH-MLKENFFH 987


>07_01_0130 - 963856-965454
          Length = 532

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 211 Y*GYMFQD*CRTSQQIKIKTIASMYLEPSMVNTLS 107
           Y  Y+F D C   +Q++++ I +  L P   NTLS
Sbjct: 176 YNSYLFMDKCMFGRQMEMEHIINFLLRPEPPNTLS 210


>11_01_0627 - 5047751-5047758,5047799-5048015,5048759-5049646
          Length = 370

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 78  FRKVNGLSKFDNVLTI--DGSKYIDAMVFIFICCE 176
           FR V GL++F   L +  D +  +DA V  F CCE
Sbjct: 62  FRTVRGLNEFAKHLLLLRDRAALLDACVINFDCCE 96


>11_06_0506 -
           24380469-24380632,24381737-24383893,24384488-24384541,
           24384543-24384597,24384914-24384916,24385192-24385231,
           24385576-24385632,24388124-24388412,24389764-24389771,
           24390633-24390688,24391207-24391488,24391651-24391811,
           24391887-24392121,24392860-24392943,24393022-24393117,
           24393333-24394055,24396523-24396987
          Length = 1642

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -2

Query: 230 EGSQQLLLRLYVSRLVPDFTTNKNKNHSINVLGTING*YIVKFREAIHLAKHQTNKTAEL 51
           + S + L  +Y S+L P F  N N+ +   +L  +N         A ++  H  + T E 
Sbjct: 158 DASARALRMIYQSKLAPKFDVNNNEKNMEFLLTLLNSENENVTELAANIISHSCDSTTEQ 217

Query: 50  VPNC 39
           +  C
Sbjct: 218 LALC 221


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 419 QCTGVRIPQTGTNLSNEIRT*QMFTIDFHGE 327
           +CTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,463,574
Number of Sequences: 37544
Number of extensions: 379309
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)