Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30079
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427...    30   2.1  
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175...    29   3.7  
04_01_0377 - 4970034-4970687                                           29   6.4  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   6.4  
11_01_0331 - 2473724-2474449                                           28   8.5  

>06_03_0256 -
           18841627-18841993,18842087-18842415,18842512-18842749,
           18844091-18844373,18844773-18844989,18845067-18845360
          Length = 575

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 735 DGPFGRPPCYKLTIDRPNPGFIQTELGTK 821
           +GPF    C+ +  D+PNP  I+  +GTK
Sbjct: 437 EGPFSFLHCWNILRDQPNPEDIKRPIGTK 465


>11_08_0021 + 27716298-27716478,27717137-27717309,27717408-27717578,
            27717967-27718077,27718168-27718245,27718642-27718832,
            27718873-27718958,27719202-27719206,27719301-27719378,
            27719465-27719527,27719597-27719680,27720049-27720209,
            27720377-27720416,27720774-27720893,27720993-27721211,
            27721927-27722100,27722202-27722883,27722986-27723185,
            27723269-27723407,27723502-27723677
          Length = 1043

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 376  VDNCPRKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDN 501
            +++C      Q+D  D DG  D+ D+     +T+++D D D+
Sbjct: 902  MESCIHLKEVQEDGDDGDGAEDLDDDDEEEEDTDEDDEDSDD 943


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
 Frame = -2

Query: 400 CTSWGSCPLGSV-----CRHRPCPNHRRLPFRL--HRCPPGEGCSAGDSC 272
           C+ WG C LGS      C+   C   +R   +    +CP    CSAG  C
Sbjct: 122 CSQWGYCGLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNNFCCSAGGYC 171


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 600 RPAGRCSVSAGSCLGHLVSRLGHGLYRC 517
           R   RCS    SC G    RLG G++RC
Sbjct: 240 RETRRCSHQRYSCSGKCNKRLGCGIHRC 267


>11_01_0331 - 2473724-2474449
          Length = 241

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 636 VVTDVALVRRGPRPAGRCSVSAGSCLG 556
           V++D    RRG RPAGR   + G C G
Sbjct: 130 VLSDRERARRGRRPAGRMVPAGGCCPG 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,200
Number of Sequences: 37544
Number of extensions: 402578
Number of successful extensions: 1100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)