Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30075
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    30   2.4  
08_02_0955 + 22994266-22995630                                         29   4.2  
08_02_0593 + 19078264-19078609,19078724-19082256                       29   4.2  
05_05_0040 + 21789322-21789734,21790429-21790459,21790730-217908...    29   4.2  
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431...    28   7.4  

>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = +2

Query: 254 RGSPERKRMRMEGPAERRXXXXXXXXXXXXXXXRQENYGGERRSFGGDERRRSPARESYR 433
           RG   R+R R   P+                  R++     R   G +ERRRSP R+   
Sbjct: 130 RGDRHRRRHRRRSPSSESSDGGRSRRHRRDESSRRQRDERRRDRGGREERRRSPDRKEPT 189

Query: 434 KPSGMGPP 457
            P    PP
Sbjct: 190 PPLPPPPP 197


>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +3

Query: 198 KTYRNESSVNYSNREYGGREDHQKEKE*GWRDQPKDVAMTAAAVITAGPTAQGRKITEAK 377
           + Y N   V  S+ E G R+D  ++ E GW D+        A V+  G    G  +T   
Sbjct: 306 RVYENAEVVQ-SDEEQGSRDDSDEDMESGWDDRDHRNRRLKAIVVANG---NGNAVT--- 358

Query: 378 GGPSVGMN 401
           GG SV  N
Sbjct: 359 GGRSVHGN 366


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -1

Query: 147  RYYNEYHYCMMNSLRH--HHGLHCFHNCLD---CYCLYKN 43
            +Y +   Y    + RH  HHG  C   C+D   C+C  KN
Sbjct: 1036 QYISRIKYPSWLTKRHPQHHGCDCSDGCIDSTKCFCAVKN 1075


>05_05_0040 +
           21789322-21789734,21790429-21790459,21790730-21790815,
           21791000-21791012
          Length = 180

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 86  WRPWWWRK 109
           WRPWWWR+
Sbjct: 61  WRPWWWRE 68


>01_06_0445 -
           29441472-29442152,29442244-29442357,29442959-29443186,
           29443284-29443586
          Length = 441

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 240 EYGGREDHQKEKE*GWRD 293
           E GGR DH KE E GW D
Sbjct: 165 ERGGRVDHVKEAEAGWCD 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,764
Number of Sequences: 37544
Number of extensions: 310565
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)