Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30019
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 31 0.92
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 31 0.92
12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937 31 1.2
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 30 1.6
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 2.8
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 29 3.7
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 29 4.9
01_05_0214 - 19362812-19363477 29 4.9
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 28 6.5
08_02_1098 - 24291138-24291851,24292607-24292861 28 8.6
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 28 8.6
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 28 8.6
02_04_0413 + 22681957-22682035,22682253-22682788 28 8.6
01_05_0624 + 23772613-23774671,23774737-23775596 28 8.6
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 31.1 bits (67), Expect = 0.92
Identities = 21/50 (42%), Positives = 24/50 (48%)
Frame = -1
Query: 719 AVGGPVLWNEPRLKPAVVRSAGVLQQF**SPSASWKEYEPFTTSPXAYLL 570
A GG W EP AV R+AGV + P WK +P SP YLL
Sbjct: 291 AGGGLEYWLEPAELAAVRRNAGVADPY-WVPPPGWKPGDP--VSPEGYLL 337
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 153 CQARCCYPCSLP-RGPCSVPGRPSCLPRG 236
C C PC LP PC +P P C PRG
Sbjct: 130 CPPPCPPPCPLPCPPPCPLPCPPPCPPRG 158
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Frame = +3
Query: 147 PRCQARCCYPCSLP------RGPCSVPGRPSC-LP-RGPCSVPGAP 260
P C C PCS P RG C P P C LP PC +P P
Sbjct: 107 PGCPCSCSTPCSFPPIGCHDRGICPPPCPPPCPLPCPPPCPLPCPP 152
>12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937
Length = 418
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/50 (42%), Positives = 23/50 (46%)
Frame = -1
Query: 719 AVGGPVLWNEPRLKPAVVRSAGVLQQF**SPSASWKEYEPFTTSPXAYLL 570
A GG W EP AV R AGV + P WK +P SP YLL
Sbjct: 281 AGGGLEYWLEPAELAAVRRKAGVADPY-WVPPPGWKPGDP--VSPEGYLL 327
>04_04_1212 -
31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 30.3 bits (65), Expect = 1.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 673 LWFVQPVYFNSSDRARQLRGKSMNPLLHH 587
LW+++P + + DR + +S PL+H+
Sbjct: 495 LWYIEPHTYKAGDRVKLFYNRSSRPLMHN 523
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 186 PRGPCSVPGRPSCLPRGPCSVPGAPVAYHTSPLRYSSAESVS 311
P P P PS P P PG+P TSP ++ S S
Sbjct: 1566 PTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYS 1607
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 HCAP*PASAPRCQARC-CYPCSLPRGPCSVPGRPSCLPRGPCSV 248
HC P P P C C C G C+ P P C G CS+
Sbjct: 120 HCCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPC--AGGCSI 161
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 25 IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 144
IV+L A V AV L P HY+P VSS S P+
Sbjct: 15 IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55
>01_05_0214 - 19362812-19363477
Length = 221
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 177 CSLPRGPCSVPGRPSCLPRGPCSVPGAPVAYHTSPLRYSSAESVSSQNI 323
C LP P P +PS P P P +P TSPL A+ + I
Sbjct: 29 CPLPLSPPYSPAQPSPPPTSP---PASPTLLPTSPLSDDHADHTTDSLI 74
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 201 SVPGRPSCLPRGPCSVPGAPVAYHTSPLRYSSAESVSSQ 317
SVPG+PS + P S+ G P+ SP +S + Q
Sbjct: 352 SVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQ 390
>08_02_1098 - 24291138-24291851,24292607-24292861
Length = 322
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 159 ARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGAPVAYHTS 278
A C Y + G + G+ +P G C+ P P +YH S
Sbjct: 219 AACAYSYNRTGG---IAGKKCNIPNGSCNYPTCPKSYHGS 255
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 135 PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGAPVAYHTSPLRYSSAESVSS 314
P APR ++ P + PR + P + P GP P + LR S+A + +
Sbjct: 73 PNPAPRSRSSRRSPLASPRTGTASPLSAAVAPGGPAPSPASAAVSSVGDLRSSAASQMEA 132
>06_03_0868 -
25544933-25544938,25544939-25545142,25545494-25545751,
25546625-25546906
Length = 249
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 156 QARCCYPCSLPRGPCSVPGRPSCLPRGPCSVPGAP 260
QA P + PR P P RPS PR + AP
Sbjct: 2 QALLLSPAAAPRPPLPAPRRPSLPPRATSILTPAP 36
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Frame = +3
Query: 123 CAP*PASA---PRCQARCCYPCSLPRGPCSVPGRP----SCLPRGPCSVP 251
C P P+ P C+ CC C G C P P C P PC P
Sbjct: 129 CPPSPSCENHHPPCKPGCCC-CGCSGGECPPPPSPPCQHECPPTPPCEHP 177
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 132 MAHNALGRNGFSGRVVHGSSQKSSFRHRDQSTQYYD 25
+ H L R GF GRV H S+ + D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,621
Number of Sequences: 37544
Number of extensions: 306269
Number of successful extensions: 915
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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