Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0254.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 33 0.29
08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597 31 0.88
03_01_0470 + 3619417-3619572,3619681-3619759,3620017-3620258,362... 30 2.0
02_05_0912 - 32689665-32690007,32690117-32690275,32690380-326905... 30 2.0
05_07_0162 + 28090579-28091343 29 2.7
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 29 4.7
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 29 4.7
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 4.7
03_05_0819 + 27948797-27948956,27948976-27949202 29 4.7
03_01_0292 + 2255011-2255564,2256491-2256701,2256792-2256902,225... 29 4.7
01_05_0551 + 23169751-23170491 28 6.2
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 28 8.2
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 28 8.2
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 8.2
01_05_0503 - 22779025-22779397,22779602-22779627 28 8.2
01_01_0083 + 631196-631675 28 8.2
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +3
Query: 216 IGERQRS--QRTGYEAPGELVR---ARVREGVPP--PLCAGRCVAPPAGPVCAFDAAGTX 374
I ER+R Q G + +L+R AR+R +PP P CA R PP P A D A +
Sbjct: 115 IQERRRRLLQGMGLASSRDLLRSRSARMRPILPPNIPRCASRRQPPPQCPAAAADDAPST 174
Query: 375 RTFATL 392
T AT+
Sbjct: 175 STAATV 180
>08_02_0543 + 18391122-18391471,18391870-18392005,18393529-18393597
Length = 184
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -3
Query: 354 RRILVLPAGPRTALHTAAAAPPRGPSLG----PAHPGPHIRCADFFDAPQSRW 208
RR L +P + LH A PP+ P+ PGP R D F AP RW
Sbjct: 13 RRHLRVPLA--SLLHPALLPPPQSTESSCPDDPSTPGPVARRGDLFAAPLRRW 63
>03_01_0470 +
3619417-3619572,3619681-3619759,3620017-3620258,
3620804-3621148,3623592-3624116
Length = 448
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 327 PRTALHTAAAAPPRGPSLGPAHPGPH 250
P ALHT AAPP GPA G H
Sbjct: 130 PSPALHTRTAAPPSHCRPGPAPSGAH 155
>02_05_0912 -
32689665-32690007,32690117-32690275,32690380-32690573,
32690669-32690861,32690956-32692169
Length = 700
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 367 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGAS 251
PA S + P G AT+R SGGG S T + + G+S
Sbjct: 92 PANSTSPEPPGGAATNRRGSSGGGGFSATGGQAGTNGSS 130
>05_07_0162 + 28090579-28091343
Length = 254
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 300 PPLCAGRCVAPPAGPV 347
PPL GRCV PP PV
Sbjct: 52 PPLAGGRCVGPPLYPV 67
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = -2
Query: 454 TPKLVTA*YVLSRHETXSSSHRVANVLX-VPAASKAHTGPAGGATHRPAHSGGGTPSRTL 278
TP L A + H S S VA AA G G + HRP P L
Sbjct: 120 TPNLADARGLQRYHRQASQSAAVATTCSRCVAADATGCGSLGASRHRPWRPRAAAPRSAL 179
Query: 277 ARTSSPG 257
AR++ G
Sbjct: 180 ARSTFRG 186
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -2
Query: 421 SRHETXSSSHRVANVLXVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 263
S T +++ A AAS A TG A +P SGG T +L SS
Sbjct: 121 SSSATAAAAAAGAGTAGSTAASSASTGNAASTAAKPTASGGATHRLSLISASS 173
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 327 PRTALHTAAAAPPRGPSLGPAHPGPHIRCADFFDAP 220
P A AAAAPP G PA P P + D + P
Sbjct: 668 PPMANGAAAAAPPGGNPAPPAGPQPGVNMFDLNELP 703
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = -2
Query: 313 AHSGGGTPSRT--LARTSSPGAS 251
A GGG+PSRT LART++P AS
Sbjct: 18 AAGGGGSPSRTPRLARTAAPFAS 40
>03_01_0292 +
2255011-2255564,2256491-2256701,2256792-2256902,
2257020-2257814
Length = 556
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 342 VLPAGPRTALHTAAAAPPRGPSLGPA 265
V PA PRTA+ AAA P++ PA
Sbjct: 15 VAPAAPRTAVVAAAAGTVSAPAVAPA 40
>01_05_0551 + 23169751-23170491
Length = 246
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -2
Query: 400 SSHRVANVLXVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 263
+S+R+ + P H G GG HR G+ R A T S
Sbjct: 42 TSNRLLSTCRFPRTPSLHGGGGGGGDHRTTDDDDGSNGRDQAATLS 87
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 367 PAASKAHTGPAGGATHRPAHSGGGT--PSRTLARTSSPGA 254
P AS H+G GG + GGG+ P LA + +P A
Sbjct: 64 PTASTKHSGSGGGGGAASNNGGGGSAPPPGNLAGSGTPPA 103
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 336 PAGPRTALHTAAAAPPRGPSLGPAHPGPHI 247
PA P+ L + PP P P PG H+
Sbjct: 20 PAPPQVFLRRSVLPPPPAPHHAPPPPGAHV 49
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +3
Query: 162 SDCMDKSRLRQSTVHSNEIGER--QRSQRTGYEAPGELVRAR-VREGVPPPLCAGRCVAP 332
+D + + Q T+ ++E + ++ RT PG+ V A V V L +GR V P
Sbjct: 700 NDYTSQHEIAQQTLSTSERQPQPEKKPPRTRPPLPGKAVAALCVASFVVGLLLSGRVVVP 759
Query: 333 PAGPVCAFDAAGTXRTFATLCELEXVSCRES 425
P + A+ +F+T CE + ES
Sbjct: 760 LLPPGSSSPASNYKTSFSTGCENKRAKLGES 790
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 157 LYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSN 41
LYK + ++L + E+K+R+ TA IR + LSN
Sbjct: 42 LYKSQEYKLHYTLETKHRNRNTANSKDGIRMAAMENLSN 80
>01_01_0083 + 631196-631675
Length = 159
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 327 PRTALHTAAAAPPRGPSLGPAHPGPHIRCADFFDAPQSRWN--ER*TGAVGFYPY 169
P T + T PP PS G ++P P ++ + S WN G G+ PY
Sbjct: 36 PPTPVTTDCPPPPSTPSSGYSYPPPSSSSSNTPPSSSSYWNYPPPQGGGGGYIPY 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,025,682
Number of Sequences: 37544
Number of extensions: 397099
Number of successful extensions: 1805
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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