Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0242.Seq
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      140   2e-33
07_01_0756 + 5819367-5820038,5820847-5821005                          135   3e-32
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    47   2e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     41   0.001
09_06_0325 + 22347286-22347574,22347770-22348054,22348508-223485...    29   5.7  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  140 bits (338), Expect = 2e-33
 Identities = 64/74 (86%), Positives = 69/74 (93%)
 Frame = +1

Query: 259 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 438
           L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81  LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140

Query: 439 AKLSVLPVRRGYWG 480
           AKLSV+PVRRGYWG
Sbjct: 141 AKLSVVPVRRGYWG 154



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 24/43 (55%), Positives = 38/43 (88%)
 Frame = +2

Query: 128 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDS 256
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I+++
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVET 80


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  135 bits (327), Expect = 3e-32
 Identities = 62/74 (83%), Positives = 68/74 (91%)
 Frame = +1

Query: 259 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 438
           L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84  LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143

Query: 439 AKLSVLPVRRGYWG 480
           AKLSV+PVRRGYWG
Sbjct: 144 AKLSVVPVRRGYWG 157



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 25/42 (59%), Positives = 37/42 (88%)
 Frame = +2

Query: 128 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 253
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE 82


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +1

Query: 274 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 453
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A +  + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230

Query: 454 LPV 462
           + V
Sbjct: 231 VTV 233


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +1

Query: 346 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 441
           FV +GD + HI LGVKC+K  AT + GAIILA
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31


>09_06_0325 +
           22347286-22347574,22347770-22348054,22348508-22348592,
           22348686-22348802,22349270-22349334,22349456-22349544,
           22349642-22349721,22349797-22349908,22349990-22350109,
           22350234-22350416
          Length = 474

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 393 VQQGSR-HCHSRRYYPC*AVSSTSPKRVLGVTRXESHTTVLCKVTGXCW 536
           V  G R H H RR   C A ++   +R   V   E     LC+V    W
Sbjct: 13  VTPGRRSHSHGRRRMCCAAAAAAQGERKTTVRSKEGDAVELCRVVNGMW 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,922
Number of Sequences: 37544
Number of extensions: 366856
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)