Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0237.Seq
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 29 2.7
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 29 3.5
07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483... 28 4.7
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 28 6.2
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253... 28 6.2
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 28 6.2
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829... 27 8.2
08_02_0197 - 14150787-14151440 27 8.2
04_04_0991 - 29969162-29969912,29970097-29970368 27 8.2
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 132 QYAGVGASTAQYHRSTRESLPTSAESDTPNNTNVAKLPTSAHEQMQYRPQLPIHIHND-L 308
++ G GAS R L + E+D V + T H + YRPQ H + D L
Sbjct: 285 EHGGAGASATVEQRR----LAYADEADHGGWRPVPVVSTGQHATLVYRPQTAAHTYQDSL 340
Query: 309 RSFV 320
R FV
Sbjct: 341 RRFV 344
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 204 QLKSEGTLLYSC---DIGLLKLPHRHIVLCR-CSQTC 106
+LK+E L C DI ++ LP RH VLC CS C
Sbjct: 343 KLKNEQILCRICFERDICIVLLPCRHYVLCEACSDKC 379
>07_03_1601 -
28047764-28047845,28048043-28048078,28048209-28048339,
28048695-28048967,28049039-28049166,28049250-28049369,
28049461-28049538,28049598-28049669,28049790-28049849,
28050096-28050217,28052918-28053048,28053382-28053534,
28053628-28053755,28053831-28053968,28054056-28054144,
28055741-28055878,28056870-28057102
Length = 703
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 224 VVWGVGFS*SRKGLSCTPVILGC*SSHTGILFSAGAVKL 108
VV F+ + +CT + +GC S+T IL SA V++
Sbjct: 480 VVSLASFNGEERIFACTGIFIGCDESNTRILTSASLVRI 518
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = +1
Query: 10 PRQPNAEKTHMQA---QTSAISNPNIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQ 180
P P+A + + A Q S NP+IM N P P+ N +P+ +
Sbjct: 879 PAPPSASQLQVHAPPVQGSVPPNPSIMHTPNAPM------PSHNTLPLPPMHPSGNPAHS 932
Query: 181 ESPFRLQLNPTPQTTPML 234
P R + P P+ P L
Sbjct: 933 SMPLRSFVPPLPEGPPPL 950
>07_03_1600 -
28024495-28024509,28024681-28024731,28025083-28025355,
28025427-28025554,28025645-28025764,28025856-28025933,
28025993-28026061,28026183-28026213
Length = 254
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 224 VVWGVGFS*SRKGLSCTPVILGC*SSHTGILFSAGAVKL 108
VV F + +CT + +GC S+T IL SA V++
Sbjct: 92 VVSLASFKGEERIFACTGIFIGCSESNTRILTSASLVRI 130
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 162 QYHRSTRESLPTSAESDTPNNTNVAKLPTSAHEQMQYRPQL 284
Q+H SLP SAE P++ ++++ T ++++ + L
Sbjct: 1066 QFHSEKSSSLPKSAEGHIPSSADISRKETPGVQRLKEQGSL 1106
>08_02_1631 +
28381248-28381418,28382069-28382144,28382925-28382995,
28383375-28383460,28384359-28384423,28384727-28385067
Length = 269
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 296 YVNRQLRSVLHLFVGGCWK 240
Y+ QLR + H FV CWK
Sbjct: 118 YMPLQLRVLFHSFVASCWK 136
>08_02_0197 - 14150787-14151440
Length = 217
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 224 HQCCQTSNIRPRTNAIPTSVAYSHTQRPEIFCPAHTMS 337
H CC + PRT P ++ + H +P I T S
Sbjct: 12 HPCCMMLSKNPRTPPPPPAMHHHHAHKPLITALTSTSS 49
>04_04_0991 - 29969162-29969912,29970097-29970368
Length = 340
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = +1
Query: 40 MQAQTSAISNPNIMQMNNIP-FSTSLTAPAENNMPVWELQQ--PNITGVQESPFRLQLNP 210
+ A A +N + +N+ F + A A N L+ P+ G +P +
Sbjct: 204 LMATNLAATNTMVNSSSNVASFQEQMNALAHANYQPGYLRDVVPSFPGQDMAPQLNSTSS 263
Query: 211 TPQTTPMLPNFQHPPTNKCN 270
TP T P+L + P CN
Sbjct: 264 TPSTAPVLRSSAEPADQCCN 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,098
Number of Sequences: 37544
Number of extensions: 312350
Number of successful extensions: 967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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