Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0045
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051...    28   6.5  
03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781...    28   6.5  
12_01_0616 - 5076126-5076371,5077386-5077613,5079356-5079859           27   8.6  

>12_02_0633 +
           21402847-21402862,21403143-21404975,21405052-21405170,
           21405288-21405722
          Length = 800

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 416 DDSSKEVFQSLLDYGVAFITGVQP-SAEATETCAKL*EEFNT 538
           D   KEV   + D    FITGV P S+E  + CAK  ++  T
Sbjct: 692 DPIEKEVDDVVADVDNEFITGVVPSSSEMDQQCAKESQQHTT 733


>03_05_0049 -
           20277234-20277251,20277670-20277795,20278085-20278153,
           20278233-20278280,20278413-20278494,20278583-20278662,
           20278764-20278835,20278912-20279006,20280396-20280477,
           20280604-20280963
          Length = 343

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 308 DYKTWKNNRRLKPRLWRGCNVADRIAKVHVDEFLDSDDSSKEVFQSLLDYGVA 466
           D + W+   R++P L R    A R+ +   D  + SDD      Q+  D  +A
Sbjct: 279 DERNWRKGLRVRPVLRRSPKSAMRLKRPDFDHLMISDDDHSPQSQASSDSPMA 331


>12_01_0616 - 5076126-5076371,5077386-5077613,5079356-5079859
          Length = 325

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 117 QRESKGHSRSSQYRSLNKDDVFYFFRTVFIESDTEF 10
           + ++ G S  SQ R   +DDV    R  ++ +D+EF
Sbjct: 206 RHQAAGSSSPSQQRREEEDDVTAAIRAAYLTTDSEF 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,017
Number of Sequences: 37544
Number of extensions: 267871
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)