BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0250.Seq (460 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 30 1.0 07_03_0846 - 21983581-21986055 29 1.4 01_06_0695 - 31292622-31293317 28 3.1 09_04_0235 + 15904891-15905218,15906732-15907594 28 4.2 08_02_1485 - 27466761-27467753 28 4.2 10_08_0113 - 14896341-14897153 27 7.3 08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352... 27 7.3 01_06_0723 + 31501900-31502808,31502846-31503295 27 7.3 06_01_0655 + 4742267-4742531,4743313-4744136 27 9.6 02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 9.6 >11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633, 2349688-2350045,2350818-2351177,2351321-2351419, 2351856-2351948,2352078-2352215,2352389-2352476, 2352682-2352770,2353113-2353178,2353370-2353481, 2354702-2354901 Length = 1185 Score = 29.9 bits (64), Expect = 1.0 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = -2 Query: 387 DAALPSTTPRQERKSSTDYSEPRHRT--ELYPDFGAVMHVLRKKPIDRSPRSKW 232 D LP Q +K Y P+ R E G ++H ++P+D S SKW Sbjct: 164 DVDLPECPRAQLKKQCIKYLGPQEREQYEYIITKGKIIHKYSEEPLDTSQGSKW 217 >07_03_0846 - 21983581-21986055 Length = 824 Score = 29.5 bits (63), Expect = 1.4 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -3 Query: 251 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 102 DL+D G +R +C+T S PD S VS+ LPD+A+ A A Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373 >01_06_0695 - 31292622-31293317 Length = 231 Score = 28.3 bits (60), Expect = 3.1 Identities = 17/55 (30%), Positives = 20/55 (36%) Frame = -2 Query: 423 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 259 P L Q D PS++ SST S P HR L P V + P Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTP 57 >09_04_0235 + 15904891-15905218,15906732-15907594 Length = 396 Score = 27.9 bits (59), Expect = 4.2 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = -3 Query: 251 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 75 ++RDP+ G+R + + +++ E RG ++ PD +A L ++ Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209 Query: 74 DGXFAPP 54 APP Sbjct: 210 QEKLAPP 216 >08_02_1485 - 27466761-27467753 Length = 330 Score = 27.9 bits (59), Expect = 4.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 167 PPDSRGSTVSISLPDSARLASALEAFRHNPADGXFAPPAAR 45 PP + G +S +P A LA++L + NPA PP ++ Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPP-PPPTSK 78 >10_08_0113 - 14896341-14897153 Length = 270 Score = 27.1 bits (57), Expect = 7.3 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%) Frame = +1 Query: 307 LSSMSGLGIVCRRL----PFLAGCCAR 375 L++++GLGI RR P LAGCC R Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207 >08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861, 3527121-3527235,3528252-3528306,3528432-3528557 Length = 322 Score = 27.1 bits (57), Expect = 7.3 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Frame = -2 Query: 402 NRSQHDAALP----STTPRQERKSSTDYSEPRHRTELYP----DFGAVMHVLRKKPIDRS 247 ++ QH AA P + P Y EP H + G VL K R+ Sbjct: 100 HQQQHAAAAPFVGAAPLPHHPSSGGACYCEPCHVAGAWRRGGCGGGGARGVLPAKRAPRA 159 Query: 246 PRSKWASTSRXAF 208 PR +W ST F Sbjct: 160 PRMRWTSTLHARF 172 >01_06_0723 + 31501900-31502808,31502846-31503295 Length = 452 Score = 27.1 bits (57), Expect = 7.3 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -2 Query: 423 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 322 PG L + DAA +TT +++R++ DYS P Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127 >06_01_0655 + 4742267-4742531,4743313-4744136 Length = 362 Score = 26.6 bits (56), Expect = 9.6 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -3 Query: 251 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 105 ++RDP G+R + F +++ E RG ++ PD A +AS Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178 >02_04_0433 - 22891261-22891509,22892181-22892301,22892405-22892496, 22892692-22892755,22892855-22892920,22893102-22893193, 22893991-22894050,22894181-22894270,22894484-22894613, 22895066-22895157,22895299-22895373,22895663-22895754, 22896496-22896586,22897541-22897574,22897745-22897791, 22899110-22899209,22899300-22899436,22900837-22901015, 22901146-22901188,22901264-22901297,22901839-22901948, 22902043-22902224,22903062-22903168,22903266-22903480 Length = 833 Score = 26.6 bits (56), Expect = 9.6 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -3 Query: 209 FECETRLVKSHCLE---PPDSRGSTVSISLPDSARLASALEAFRH 84 F + RL K HCLE P+S+ S+V +++ + A+ E H Sbjct: 524 FMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVH 568 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,283,399 Number of Sequences: 37544 Number of extensions: 235155 Number of successful extensions: 688 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 688 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 907440304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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