BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0231.Seq (683 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836 48 7e-06 01_06_0584 - 30407012-30408531,30408625-30408955 47 2e-05 12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464... 44 1e-04 12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 42 3e-04 01_06_0633 - 30741716-30742432 31 0.64 03_04_0196 - 18365840-18366701,18366875-18366950,18366989-183672... 30 1.5 02_05_0852 - 32218230-32218366,32218457-32218545,32218653-322187... 30 1.5 11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 30 2.0 12_01_0454 + 3580332-3581714 29 2.6 01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 29 2.6 11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170... 29 4.5 01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 29 4.5 01_06_1495 + 37769982-37771496 28 6.0 03_06_0607 + 35037467-35038624 28 7.9 01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 28 7.9 >11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836 Length = 661 Score = 48.0 bits (109), Expect = 7e-06 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = -2 Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41 M+G F A S +TGVL D A LLHQ+GA++ +D+ VE++ + PG E+ Sbjct: 267 MLGSFSACSNVTGVLTDTRAVARLLHQHGAFACFDFAARNSGPYVEID-MRPG---EVDG 322 Query: 40 KDAVFFNCEKFXG 2 DAVF + KF G Sbjct: 323 YDAVFLSPHKFVG 335 Score = 29.1 bits (62), Expect = 3.4 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -3 Query: 426 PRRLFTHVPTTLRPQ-KVALFVSSRETETQLAPWREFNSEIIKIAETKEGFIDLNNLEQ 253 P L LRP+ + +FV E + L WR ++++++ +G +DL L + Sbjct: 197 PGPLRERAAALLRPEERWVVFVGPYEHHSNLLSWRRSLADVVEVGAGDDGLLDLAALRR 255 >01_06_0584 - 30407012-30408531,30408625-30408955 Length = 616 Score = 46.8 bits (106), Expect = 2e-05 Identities = 28/73 (38%), Positives = 39/73 (53%) Frame = -2 Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41 M+G F A S +TG+ D A LLH YGA++ +D+ AP ++M G ED Sbjct: 241 MLGSFSACSNVTGIRTDTRAVARLLHGYGAYACFDFACSAPYVGIDMR---SGEEDGY-- 295 Query: 40 KDAVFFNCEKFXG 2 DAV+ + KF G Sbjct: 296 -DAVYLSPHKFLG 307 >12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735, 4642830-4643285,4643382-4643774,4643868-4643870, 4645366-4645417,4645929-4646023 Length = 681 Score = 43.6 bits (98), Expect = 1e-04 Identities = 24/73 (32%), Positives = 38/73 (52%) Frame = -2 Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41 M+G F A S +TG++ D +LHQ+GA++ +D+ P ++M E+ Sbjct: 244 MLGSFSACSNVTGIVVDTREIARVLHQHGAFACFDFAASGPHVKIDMK------SGEIDG 297 Query: 40 KDAVFFNCEKFXG 2 DAVF + KF G Sbjct: 298 YDAVFLSPHKFIG 310 >12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923, 4570395-4571104 Length = 598 Score = 42.3 bits (95), Expect = 3e-04 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -2 Query: 220 MIGFFPAVSKLTGVLADDVATTLLLHQYGAWSFWDYTLVAPSSTVEMNPVIPGVEDEMVK 41 M+G F A S +TG+ D +LHQ+GA++ +D+ P ++M E+ Sbjct: 199 MLGSFSACSNVTGIAVDTRELARVLHQHGAFACFDFAASGPYVKIDMK------SGEVDG 252 Query: 40 KDAVFFNCEKFXG 2 DAVF + KF G Sbjct: 253 YDAVFLSPHKFVG 265 >01_06_0633 - 30741716-30742432 Length = 238 Score = 31.5 bits (68), Expect = 0.64 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 7/43 (16%) Frame = -1 Query: 467 IRSAVGASPEDVLVLGAS----LPMFLRXCGR---RRWLCSCL 360 + +A G SP VL LGAS LP R CGR RR C CL Sbjct: 142 VAAAPGWSPSSVLGLGASNKLRLPSLGRRCGRVLPRRLSCKCL 184 >03_04_0196 - 18365840-18366701,18366875-18366950,18366989-18367237, 18367819-18367837 Length = 401 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +2 Query: 20 VKEHRILFDHLILHSRNYRVHLHGRGGSNQCVVPERPGSVLMEQQ 154 ++ +R+L D H+R Y L + G C V + PGS L+ Q Sbjct: 64 IQAYRMLKDRSFAHTRAYDPELLQKIGWENCAVVDEPGSHLLTLQ 108 >02_05_0852 - 32218230-32218366,32218457-32218545,32218653-32218757, 32218899-32219011,32219089-32219157,32219616-32219748, 32219849-32220057 Length = 284 Score = 30.3 bits (65), Expect = 1.5 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 202 AVSKLTGVLADDVATTLLLHQYGAWS 125 A++ + G+LA DVA+ ++ YGAWS Sbjct: 103 AMAGVAGILATDVASWYVMLSYGAWS 128 >11_04_0318 + 16336356-16336358,16337254-16337484,16337580-16337654, 16337741-16337839,16339010-16339121,16339586-16339713, 16340022-16340141,16340967-16341047,16341460-16341537, 16341616-16341708,16341880-16341934,16342795-16342871, 16343008-16343079,16343159-16343242,16343620-16343739, 16343824-16343892,16344721-16344798,16345684-16345822, 16345990-16346154,16346239-16346384,16346501-16346680, 16346834-16346922,16346997-16347028,16347120-16347226 Length = 810 Score = 29.9 bits (64), Expect = 2.0 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 199 RQERIQSFVLPCQSSLAVLFQIVEIDKTFFCF 294 R+ R+ + LPC + L+ LF+ +++ F CF Sbjct: 537 RRIRVMNLSLPCTNMLSNLFRYADLETQFTCF 568 >12_01_0454 + 3580332-3581714 Length = 460 Score = 29.5 bits (63), Expect = 2.6 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -1 Query: 419 ASLPMFLRXCGRRRWLCSC 363 A L + CGR RWLCSC Sbjct: 328 ADLKTHEKHCGRDRWLCSC 346 >01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161, 192248-192356,192401-192496,192724-193994,194200-194384, 194619-195055,197034-197077,197830-199036,199253-199479 Length = 1411 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Frame = +2 Query: 254 CSK--LLRSIKPSFVSAILIISELNSLHGASWVSVSREDTNKATFCGRXVVG-TWVKR 418 C K ++ + S +S +++ +E +SLH +SW + + T++ + GR ++ WV R Sbjct: 223 CGKAPIVHFVDTSELSKLVLAAE-SSLHSSSWEMQANKITSEHDYSGRFIIDLQWVSR 279 >11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277, 1705378-1705463,1705574-1705823,1706220-1707246 Length = 638 Score = 28.7 bits (61), Expect = 4.5 Identities = 20/52 (38%), Positives = 22/52 (42%) Frame = -2 Query: 442 LKMFWSSAPLYPCSYDXAAAEGGFVRVFTGNGDPTXXMEGIQFRDN*DSRNK 287 L MF S+ P S AAA G V VF G G +G Q D NK Sbjct: 304 LHMFVWSSSASPVSERAAAAAAGAVHVFGGGGADHGDAKGAQAYDEYSFGNK 355 >01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506, 2729017-2729070,2729310-2729380,2729504-2729585, 2729678-2729774,2729902-2729972 Length = 234 Score = 28.7 bits (61), Expect = 4.5 Identities = 19/56 (33%), Positives = 30/56 (53%) Frame = -1 Query: 539 CY*VYSALVXSGQSDIYRSESKSIIRSAVGASPEDVLVLGASLPMFLRXCGRRRWL 372 CY + AL+ G +Y + + ++ + A E VLV +SLP+F+R R R L Sbjct: 29 CY-MTLALLDKGHEAVYAAIERPLLFTQTAAILE-VLVFPSSLPLFIRENWRLRGL 82 >01_06_1495 + 37769982-37771496 Length = 504 Score = 28.3 bits (60), Expect = 6.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -1 Query: 419 ASLPMFLRXCGRRRWLCSC 363 A L + CGR +WLCSC Sbjct: 365 ADLKTHEKHCGRDKWLCSC 383 >03_06_0607 + 35037467-35038624 Length = 385 Score = 27.9 bits (59), Expect = 7.9 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -1 Query: 419 ASLPMFLRXCGRRRWLCSC 363 A L + CGR RW+CSC Sbjct: 271 ADLRTHEKHCGRDRWVCSC 289 >01_06_0004 + 25507739-25508206,25509346-25509477,25509910-25510086, 25510175-25510219,25510305-25510512,25510766-25510825, 25510826-25511016,25511219-25511614 Length = 558 Score = 27.9 bits (59), Expect = 7.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 449 LLRRCVLYSSIQICKCRFGRSXRERCTPSSMCRQN 553 LL L S+I +C R G+ R R +PSS +N Sbjct: 13 LLVLLALCSTIDVCDARRGKHWRPRSSPSSSLLRN 47 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,811,723 Number of Sequences: 37544 Number of extensions: 381478 Number of successful extensions: 1056 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1030 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1054 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1733104716 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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