Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0227.Seq
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    31   1.3  
10_08_1048 - 22553676-22554866                                         30   2.3  
09_01_0019 + 403078-404211                                             28   9.2  
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342...    28   9.2  

>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 25/89 (28%), Positives = 37/89 (41%)
 Frame = +3

Query: 3   SLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKDA 182
           S PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L   
Sbjct: 7   SKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNL--- 63

Query: 183 SPVLDHAICKSYPDSSKLTTSDARPPSIG 269
             + D A   S+ D++    S   PP  G
Sbjct: 64  -ALFDLAPSPSHHDAAAAAASPGAPPPSG 91


>10_08_1048 - 22553676-22554866
          Length = 396

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 183 SPVLDHAICKSYPDSSKLTTSDARPPSIGFDLIK 284
           SP+ D A+   +P  +K T+    PPS+GFDL +
Sbjct: 175 SPLPDSAV--RWPPGAKCTSFSCLPPSLGFDLAR 206


>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 109 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSD 2
           G S  DSG GA ++A   K  SRR  +      GSD
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSD 356


>01_05_0511 -
           22831889-22832523,22833743-22833835,22834018-22834215,
           22834365-22834494,22834596-22834714,22835244-22835487,
           22835607-22835807
          Length = 539

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 203 DLQKLSRFIKINDFGREASVDWF*SNKSTHP 295
           +L KL   +K+ DFG +AS+ +F ++   HP
Sbjct: 143 NLTKLLDTLKLEDFGLDASMPYFRADPQGHP 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,355,840
Number of Sequences: 37544
Number of extensions: 472951
Number of successful extensions: 1012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)