Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0211.Seq
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 124 5e-29
03_01_0547 + 4093196-4093657,4094267-4095148 124 5e-29
03_01_0544 + 4082528-4082989,4083585-4084466 124 5e-29
03_01_0543 + 4076981-4077442,4078145-4079026 124 5e-29
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 49 4e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 46 4e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 46 4e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.008
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 5.0
02_05_0879 - 32444967-32445250,32445643-32445674,32445752-324458... 28 6.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 8.7
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 124 bits (300), Expect = 5e-29
Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Frame = -3
Query: 725 QEAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLH 546
QEA+PGDNV FNVK + + K + FT+QVI + +
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKEAASFTSQVIIMNHP-GQIGNGY 345
Query: 545 TSLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQE 369
+ H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E
Sbjct: 346 APVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSE 405
Query: 368 FPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 406 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 124 bits (300), Expect = 5e-29
Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Frame = -3
Query: 725 QEAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLH 546
QEA+PGDNV FNVK + + K + FT+QVI + +
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKEAASFTSQVIIMNHP-GQIGNGY 345
Query: 545 TSLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQE 369
+ H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E
Sbjct: 346 APVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSE 405
Query: 368 FPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 406 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 124 bits (300), Expect = 5e-29
Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Frame = -3
Query: 725 QEAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLH 546
QEA+PGDNV FNVK + + K + FT+QVI + +
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKEAASFTSQVIIMNHP-GQIGNGY 345
Query: 545 TSLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQE 369
+ H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E
Sbjct: 346 APVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSE 405
Query: 368 FPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 406 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 124 bits (300), Expect = 5e-29
Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Frame = -3
Query: 725 QEAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLH 546
QEA+PGDNV FNVK + + K + FT+QVI + +
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVAS-NSKDDPAKEAASFTSQVIIMNHP-GQIGNGY 345
Query: 545 TSLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQE 369
+ H H ++FAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E
Sbjct: 346 APVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSE 405
Query: 368 FPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264
+PPLGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 406 YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/58 (55%), Positives = 41/58 (70%)
Frame = -1
Query: 685 RNVSVKELRRGYVAGDSQKXPT*GC*QILQLKSLIXNHPGQISNGYTPVLDCHTAHIA 512
+NV+VK+L+RGYVA +S+ P + +I NHPGQI NGY PVLDCHT+HIA
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIA 357
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = -3
Query: 500 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTV 321
+I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R T+
Sbjct: 583 KILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTI 642
Query: 320 AVGVIKAV 297
AVG++ V
Sbjct: 643 AVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -3
Query: 527 HCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 348
H + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 347 AVRDMRQTVAVGVI 306
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -3
Query: 527 HCPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 348
H + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 347 AVRDMRQTVAVGVI 306
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -3
Query: 494 KEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 339
K++ D + K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 365 KKEADPKK-KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 88 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 168
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>02_05_0879 -
32444967-32445250,32445643-32445674,32445752-32445809,
32445840-32445913,32446004-32446088,32447054-32447735
Length = 404
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 418 MAASPDLMDFGLTSVDLPVRRSTFSLISANCRQCGQC--GNPRLVC 549
+AA D++ L L V T++L + NC QC C GN L C
Sbjct: 215 IAAPGDILAIPLPDHGLIVANGTYALTAGNCVQC-SCGPGNLNLYC 259
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 301 ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRR 480
A+ P TV + T ++ RG K +GL G KLT S L LT ++ +R
Sbjct: 282 AIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLSTALSPIALTCMEPKKKR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,143
Number of Sequences: 37544
Number of extensions: 380638
Number of successful extensions: 959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -