Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0147.Seq
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 50 2e-06
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149... 30 1.6
08_01_0496 + 4319646-4320371,4321007-4321045 29 2.8
04_01_0359 + 4711289-4713052,4713423-4713950 29 2.8
01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070 29 3.6
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 28 6.4
05_04_0302 - 20004802-20005360,20005412-20005623 28 6.4
12_02_0306 + 17307166-17309091 28 8.4
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.4
06_03_0752 - 24171847-24174321 28 8.4
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +2
Query: 32 LGIAEVPVIRKVRVALFSTGDELQLPG-QPLGDGQIYDTNRLAVHLMLEQLGCEVINLGI 208
+G+ V V R+ +A+FSTGDEL P L GQI D+NR + Q C+V++LGI
Sbjct: 169 VGVTTVKVYRRPTIAVFSTGDELVEPATASLSRGQIRDSNRAMLIAAAIQHKCKVVDLGI 228
Query: 209 IRD 217
+D
Sbjct: 229 AKD 231
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Frame = +1
Query: 256 SQADXXXXXXXXXXXEADYTKTILEELGEIAFWKLAIKPGKPFAFGKL---------SNS 408
S AD + D K L +G+I F K+ +KPGKP F ++
Sbjct: 246 SDADIILTSGGVSMGDRDLVKPCLASMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKV 305
Query: 409 WFCGLPGNPV 438
GLPGNPV
Sbjct: 306 LAFGLPGNPV 315
>01_05_0752 -
24909954-24910502,24914620-24914786,24914916-24914979,
24915472-24915597,24915673-24915943,24916032-24916287,
24916386-24916754,24916850-24916891,24917474-24917682,
24918074-24918109,24918509-24918918,24919314-24919438,
24920267-24920333,24921596-24921652
Length = 915
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2
Query: 706 CRESRSSTIKQLPRLKELNICEP*CPVV 623
C S+ TIK L RLK NI EP CP V
Sbjct: 203 CMASQIVTIKVLERLKARNIEEPRCPHV 230
>08_01_0496 + 4319646-4320371,4321007-4321045
Length = 254
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 607 AIGVALQHAALEIKTSWRFFQA 542
A+GVAL HA + ++ WRF +A
Sbjct: 175 AVGVALHHAVADGRSVWRFIEA 196
>04_01_0359 + 4711289-4713052,4713423-4713950
Length = 763
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 140 DTNRLAVHLMLEQLGCEVINL 202
DTNR H +LE+LGC V+++
Sbjct: 649 DTNRAVTHKLLEKLGCLVLSV 669
>01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070
Length = 622
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -2
Query: 607 AIGVALQHAALEIKTSWRFFQAGRCAVXWRAGRRWRCYRLVLPAKAVPVDRRSASLKP 434
A+GVA+ HA + ++ WRF A W A R R P+ P RSA + P
Sbjct: 324 AVGVAVHHAVADGQSFWRFMDA------WSAAARGR------PSPPAPAFDRSAIVHP 369
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -2
Query: 607 AIGVALQHAALEIKTSWRFFQAGRCAVXWRAGRRWRCYRLVLPAKAVPVDRRSASLKP 434
A+GVA+ HA + + WRF W A R R P+ PV RSA + P
Sbjct: 168 AVGVAVHHAVADGLSFWRFMDV------WSAAARGR------PSPPAPVFDRSAIVHP 213
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 632 SGGRHFQFRHRRCVAARRAGNQDV--LAFFSGGTLCGXXARGQALAVLPLSFASKG 471
S GR Q H VA R AG+ D+ A F G CG G A LP A G
Sbjct: 57 SPGRESQDAH--LVATRFAGHPDLHLFAVFDGHGACGAACAGFARDALPRLLAGVG 110
>05_04_0302 - 20004802-20005360,20005412-20005623
Length = 256
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = -2
Query: 631 PVVVTSSFAIGVALQHAALEIKTSW---RFFQAGRC-AVXWRAGRRWRCYRLVLPAKAVP 464
P+VV + VA++ A +E + R+ +AGR A RRW R P A P
Sbjct: 149 PMVVEADTVRPVAVEAAVVEARARRVPVRYDEAGRRGARKCSRRRRWPTQREARPVLAKP 208
Query: 463 VDRRSASLKPGCPAG 419
+ R + G P G
Sbjct: 209 DEARPVAAHKGWPGG 223
>12_02_0306 + 17307166-17309091
Length = 641
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -1
Query: 590 AARRAGNQDVLAFFSGGTLCGXXARGQA 507
A AG LA GGTLCG ARG A
Sbjct: 145 AGAGAGVGSSLAGVGGGTLCGGGARGGA 172
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -1
Query: 590 AARRAGNQDVLAFFSGGTLCGXXARGQA 507
A AG LA GGTLCG ARG A
Sbjct: 296 AGAGAGVGSSLAGVGGGTLCGGGARGGA 323
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 307 PPHPLKHRRN*SPHPPGCGFNKCGAQG 227
P HPL H R SP PP G G++G
Sbjct: 277 PDHPLSHSRGGSPSPPISG-RDMGSRG 302
>06_03_0752 - 24171847-24174321
Length = 824
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 326 RIVLV*SASPTETPPELITTSAWLRLQ*MRRAGHGDRRG 210
R+V + PT PP+ W RL+ R G GD G
Sbjct: 147 RVVFDLAEVPTRVPPDSPLAPQWYRLEERRVGGGGDGGG 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,893,514
Number of Sequences: 37544
Number of extensions: 454722
Number of successful extensions: 1457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -