Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0126.Seq
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001     28   2.1  
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444...    27   2.8  
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808...    27   4.9  
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839...    27   4.9  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    26   6.4  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    26   6.4  
02_02_0634 + 12441374-12441383,12441991-12442187,12442270-124424...    26   6.4  
01_01_0148 - 1337494-1338057                                           26   6.4  
01_06_0545 + 30123621-30124142                                         26   8.5  

>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
          Length = 708

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 237 ALVLTVICHLAIRRRYYNGSAG 302
           ALVL V+C  A RRR  NG  G
Sbjct: 278 ALVLLVVCTAASRRRAANGEVG 299


>03_02_0801 +
           11343227-11343885,11344018-11344087,11344362-11344433,
           11344511-11344980,11345626-11346598
          Length = 747

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 143 DRRKRXISESI--CQRCFHQSRTKVRGSKAIRYRPSSNRNMSSSDPPTLLQWLGG 301
           +++K  + + +  CQR +     ++      +Y   S RNMSS +   L  W+ G
Sbjct: 409 EKQKEILKQELLHCQRMYRPVFERLHSVLVEKYELKSTRNMSSIEALGLFLWIVG 463


>12_02_0893 +
           24077634-24078379,24079347-24080412,24080741-24080866,
           24081278-24081384,24081720-24081744
          Length = 689

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 188 FHQSRTKVRGSKAIRYRPSSNRNMSSSDP-PTLLQWLGGQLPGNQR 322
           + QSR+ +R    + +     +N   S P P+L+ +  G+LP  QR
Sbjct: 456 YAQSRSPIRAPLGVSFGDPKAQNSRPSIPHPSLICYKNGELPEAQR 501


>01_05_0559 +
           23281408-23282457,23282580-23282942,23283938-23283991,
           23284088-23284156
          Length = 511

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 309 GSCPPSHCSNVGGSLDDILRLELG 238
           G C P+  +N+ G+LD+I+ +  G
Sbjct: 249 GGCLPASVANMSGTLDEIILMNTG 272


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 93  INHYLGVLKTNKIEPRSYSIIPCTKYS 13
           I H L +LK  KI P   +I  C +YS
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYS 845


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 105 PVIPINHYLGVLKTNKIEPRSYSIIPCTKY 16
           P+  +  YLG+   NK+ P+ Y +  C K+
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKW 276


>02_02_0634 +
           12441374-12441383,12441991-12442187,12442270-12442485,
           12442561-12442677
          Length = 179

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 162 SAKAFAKGVFINQERKLEVRRRLDTA---LVLTVICHLAIRRRYYNGSAG 302
           S+  F   V I +ER L+ +R+ D +   L+L V+CH+A     Y  S G
Sbjct: 51  SSLLFGGIVNIGKERPLD-KRQADVSIGLLLLGVLCHIATLVSKYTSSTG 99


>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 194 DENTFGKCFR*CXSCDDP 141
           DE   G+CFR C +C DP
Sbjct: 72  DELEPGQCFRQCEACRDP 89


>01_06_0545 + 30123621-30124142
          Length = 173

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 321 LWFPGSCPPSHCSNVGGSLDDILRLELGRYLIA 223
           LW P S PP     +G +  D   LE  +++ A
Sbjct: 2   LWLPSSPPPPPPLTIGEAFPDARHLETPKWIAA 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,443,602
Number of Sequences: 37544
Number of extensions: 141282
Number of successful extensions: 404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)