Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0117
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    50   2e-06
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788...    31   0.87 
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492...    28   8.1  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    28   8.1  

>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 256 WFXFIQHNIP-IDADLIVYLKTSPSIVYQRIKKRARSEEQCVPLSYIEELHRLHEDWLI 429
           WF  +  ++P +  D  +YL+ SP   ++R+  R RSEE  V L Y+  LH  HE WL+
Sbjct: 155 WFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMVRKRSEEGGVTLDYLRGLHEKHESWLL 213


>05_05_0357 +
           24377989-24378039,24378601-24378632,24378724-24378818,
           24379165-24379237,24379804-24379867,24380465-24380732,
           24381132-24381202,24382028-24382084,24382302-24382403,
           24382544-24382588,24383616-24383693,24384350-24384400,
           24384475-24384556,24384883-24384956,24386093-24386144,
           24386230-24386288,24386380-24386456,24386692-24386778,
           24387011-24387101
          Length = 502

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = -3

Query: 541 AFLKI*CSLLLIHRLSERGLNQHLTLIL 458
           AFLK  CSLL I+++ E G+++HL + L
Sbjct: 234 AFLKCICSLLHINKIFEVGISEHLAIKL 261


>04_04_0318 +
           24347364-24348826,24348920-24349048,24349158-24349293,
           24349447-24349535,24349631-24349742,24349836-24349942,
           24350033-24350129
          Length = 710

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 355 ARSEEQCVPLSYIEELHRLHEDWLINR 435
           ++SE +C+ L  +E +  LH++W+++R
Sbjct: 462 SQSEVKCLMLQLLEGVKYLHDNWVLHR 488


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 355 ARSEEQCVPLSYIEELHRLHEDWLINR 435
           ++SE +C+ L  +E +  LH++W+++R
Sbjct: 446 SQSEVKCLMLQLLEGVKYLHDNWVLHR 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,449
Number of Sequences: 37544
Number of extensions: 342010
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)