Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0134.Seq
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0312 + 2764744-2767390,2767632-2767990                           29   1.8  
04_03_0634 - 18211054-18212169,18213449-18214219                       28   4.1  
09_06_0261 - 21919017-21920594                                         27   9.4  

>08_01_0312 + 2764744-2767390,2767632-2767990
          Length = 1001

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +2

Query: 338 VWARPVASARALGPVETELLVEEQLHAGAGLERRVLEGVLAADVRPRGQVLVVGFLRTDA 517
           +W  P A   A  P E    + +    G G +R V E  +   +R R  V ++G+     
Sbjct: 722 LWQAPAAQKEAAAPTEQNQKLRQDSDGGGGGKRTVAEVEVLGHLRHRNIVRLLGWCTNGE 781

Query: 518 MSVL 529
            ++L
Sbjct: 782 STML 785


>04_03_0634 - 18211054-18212169,18213449-18214219
          Length = 628

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +2

Query: 356 ASARALGPVETELLVEEQLHAGAGLERRVLEGVLAADV 469
           ASAR LG V+ ELLV+ ++   AGLER +  G   A++
Sbjct: 146 ASAR-LGRVKRELLVDRRVLDLAGLERWLRRGEAVAEL 182


>09_06_0261 - 21919017-21920594
          Length = 525

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 441 CWREYLRQMSAHAVRCLSL 497
           CWR Y+R       RCLSL
Sbjct: 158 CWRGYVRAAVGDGARCLSL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,091
Number of Sequences: 37544
Number of extensions: 213464
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)