Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0097.Seq
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    29   4.9  
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907...    28   6.5  
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349...    28   8.6  

>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 105 LVEIFLEDDPYEQGSSQRHHCPFQFRTICDDFAS 4
           L+   L+    E G  +    PF  RT+CDD  S
Sbjct: 490 LINEVLDQAKIESGKLELETVPFDLRTVCDDILS 523


>12_01_0918 +
           9072774-9072863,9073385-9073539,9073834-9074213,
           9074299-9075273,9076001-9076134
          Length = 577

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 436 ICQNPSVTRAINNVNRLPTVSAREHTRCYVHMI 338
           +CQ P +  A+N     PT+ ARE     VH++
Sbjct: 39  LCQPPLIITAVNGQLPGPTIYAREGDTVVVHLV 71


>11_06_0032 +
           19432305-19432510,19433390-19434326,19434880-19434975,
           19435518-19435654,19435888-19436056
          Length = 514

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 275 QPXKPDPERPYILNKTFRKSHSNISKRSNIV 183
           +P   DP+ PY+L+  F  SH ++     +V
Sbjct: 139 RPSSDDPDWPYVLDTHFSGSHLSVKLEDEVV 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,166
Number of Sequences: 37544
Number of extensions: 330391
Number of successful extensions: 1057
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)