Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0062.Seq
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    30   2.2  
01_01_0113 + 842543-843191,844964-844987,845202-846274                 29   5.1  
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553...    28   6.8  
01_01_0098 + 744582-745380,746107-746130,746500-747569                 28   6.8  

>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 15  PRASFCFQTCNAKCSSKFLNVIFFLLLYVVLGI-FVWRTVLI 137
           PR S+   T   KC+  +    +F+L+  +LGI F+W+ V I
Sbjct: 37  PR-SYSKWTSRLKCNLYYYRTNYFILIMFILGIGFIWKPVAI 77


>01_01_0113 + 842543-843191,844964-844987,845202-846274
          Length = 581

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -1

Query: 202 ISSSFF--LKCYYNSK*YIKDTKFIRTVRQTKIPSTTYNNKKKITLR 68
           ++++F+  LK  YN + ++K   F++T   +K    T+++ KKIT R
Sbjct: 239 VATAFYISLKSRYNKEIHLKVEMFLKTYGTSKPMRYTFSDVKKITRR 285


>11_06_0756 +
           26952196-26952264,26952760-26953206,26954009-26955358,
           26955400-26955408
          Length = 624

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 415 IVSIYIKYGCFCTIVFCSAACGNFGDASNVC 323
           +V +++      T+ F S  CG + DA+ VC
Sbjct: 322 VVHLHVPAASSTTLTFSSVECGGYYDAATVC 352


>01_01_0098 + 744582-745380,746107-746130,746500-747569
          Length = 630

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 184 LKCYYNSK*YIKDTKFIRTVRQTKIPSTTYNNKKKITLR 68
           LK  YN + ++K   F+RT   +K    T++  KKIT R
Sbjct: 296 LKQRYNEEVHLKVEMFLRTYGTSKPTRYTFSQVKKITRR 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,351
Number of Sequences: 37544
Number of extensions: 251877
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)