Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E11f
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606...    27   5.6  
04_04_0309 + 24296788-24296879,24298559-24298715,24299229-242992...    26   9.8  

>03_05_1011 +
           29658144-29658310,29659531-29659676,29660526-29660602,
           29660682-29660804,29661817-29661924,29661995-29662075,
           29662157-29662309,29662469-29662540,29662745-29662863,
           29662958-29663071,29663176-29663221,29664865-29664933,
           29665662-29665808,29666410-29666706
          Length = 572

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 187 WFMTHSDAITELHLLKLIDKHRRHF 113
           W +T  D + +LH L  +D+   HF
Sbjct: 451 WLITRGDVVLQLHGLDRVDRKLDHF 475


>04_04_0309 +
           24296788-24296879,24298559-24298715,24299229-24299279,
           24299870-24300061
          Length = 163

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 26  RQLNGSYVPRLSLKLLVLCSWSYF 97
           R++ G  VP++SL  ++L ++SYF
Sbjct: 122 REILGHTVPQVSLVCMILSNFSYF 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,682,085
Number of Sequences: 37544
Number of extensions: 142835
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)