Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E05f
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0963 + 22949898-22949985,22950295-22950364,22951204-229512...    27   4.1  
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186...    27   4.1  

>07_03_0963 +
           22949898-22949985,22950295-22950364,22951204-22951270,
           22951361-22951456,22951796-22951893,22951921-22952089,
           22952899-22952940,22953967-22954023,22954116-22954166,
           22954284-22954340,22954522-22954539
          Length = 270

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 158 DKVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIK 277
           DK+EK+ K + D + D S + + +     MK  E IQ+ K
Sbjct: 225 DKLEKEKKLSEDNVKDLSADLQKVTDE-YMKKIEAIQKQK 263


>04_04_0122 -
           22918146-22918220,22918455-22918496,22918586-22918642,
           22918784-22918844,22919219-22919280,22919372-22919485,
           22919565-22919636,22919824-22919874,22919990-22920112,
           22921261-22921383
          Length = 259

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +2

Query: 155 EDKVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRI 274
           +D++EK N+ A DK+++   +   +R+   ++  + I++I
Sbjct: 36  QDEIEKVNEEACDKVLELEQKYNEVRRPVYVRRNKIIKQI 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,525,171
Number of Sequences: 37544
Number of extensions: 48810
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)