Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D02f
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141...    26   8.9  

>05_04_0284 -
           19813179-19813340,19813464-19813748,19813850-19814131,
           19814224-19814531,19814654-19814927,19815807-19816175,
           19816372-19816434,19817495-19817789,19817818-19818008,
           19818123-19818428,19818516-19818638
          Length = 885

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 168 THVAFFMYLLTGLLTSKIATKPLVL 94
           +HVA FM  L GLL  K+  +PLVL
Sbjct: 815 SHVAQFM-ALDGLLDGKLKWRPLVL 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,488,245
Number of Sequences: 37544
Number of extensions: 80557
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)