Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0017.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0924 - 33058194-33058697,33058798-33060147,33060234-330603...    27   7.0  

>01_06_0924 -
           33058194-33058697,33058798-33060147,33060234-33060303,
           33060918-33060976
          Length = 660

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 265 HNSGTYPCGPTYYPGTGNYANFENLHAWXLLHTDIPSSWKMSMKALST 408
           HN     C   Y   T +YA    +        D+ ++WK S+KAL T
Sbjct: 106 HNVVCLRCAAEYLRMTDDYAEGNLITQAESFLADVLANWKDSIKALET 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,112,690
Number of Sequences: 37544
Number of extensions: 140337
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)