Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30106
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0931 - 21647562-21649037                                         28   6.4  
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449...    27   8.5  

>10_08_0931 - 21647562-21649037
          Length = 491

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 328 HLRIL*RHDPWSDESGXRDRVTPLPPSSTPIHMK*PYASL 209
           H  +L    PW   SG  D   P PPS +P  +  P +SL
Sbjct: 210 HETVLPSPIPWRSRSGRFDASAPSPPSPSPKRLS-PASSL 248


>08_02_0849 -
           21841470-21841883,21843748-21843813,21844768-21844951,
           21845427-21847468,21848544-21848870
          Length = 1010

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  WPVSSSTHLSNKNKTQTDDSTNDTFDDGWMIF 108
           WPV +   L N   T+  + TND+FDD W  F
Sbjct: 467 WPVGNINELHN---TKVVNETNDSFDD-WQDF 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,035
Number of Sequences: 37544
Number of extensions: 288236
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)