Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30088
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0336 + 2712412-2712576,2713663-2713738,2713840-2713898,271... 60 2e-09
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 29 2.3
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 29 4.0
09_04_0750 + 19923791-19923912,19924175-19924236,19925090-19925307 28 5.3
03_01_0473 - 3639533-3639598,3639848-3639955,3640037-3640126,364... 28 5.3
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 28 7.0
06_03_1346 + 29480482-29480676,29480754-29481067,29481164-294812... 28 7.0
05_03_0266 + 11303932-11304072,11304150-11304185,11304640-113049... 28 7.0
>01_01_0336 +
2712412-2712576,2713663-2713738,2713840-2713898,
2714009-2714148,2714690-2714745,2714832-2714908,
2715007-2715075
Length = 213
Score = 59.7 bits (138), Expect = 2e-09
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Frame = +1
Query: 226 DMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRIIEW 405
+ A +HV + + LP+ +S + +T+AYF+VAGL +L + +++ D +I +W
Sbjct: 8 EFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKD---QIAKW 64
Query: 406 LYRLQVHP--DKETGDMSLCGFQGSSTINI----RLDPDNNQFRCGHLAMTYTGSVYTAG 567
+ QVHP D E + GF GS T DP +N HLA TY+
Sbjct: 65 ILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNG---SHLASTYSALAILKI 121
Query: 568 VG 573
VG
Sbjct: 122 VG 123
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 226 DMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRIIEW 405
++ QHV+Y R L L S D R + Y+ + L +L I D+ I+++
Sbjct: 67 ELWREQHVEYLTRGLKHLGPSFHVLDANRPWLCYWIIHALALLDEIPD---DVEDDIVDF 123
Query: 406 LYRLQVHPDKETG 444
L R Q DK+ G
Sbjct: 124 LSRCQ---DKDGG 133
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 412 RLQVHPDKETGDMSLCGFQGSSTINIRLDPDNNQFRCGH 528
R +++ KETG M G G STIN P N+ G+
Sbjct: 753 RAELNALKETGKMMAHGVDGESTINELGKPSNSDINKGN 791
>09_04_0750 + 19923791-19923912,19924175-19924236,19925090-19925307
Length = 133
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 205 LLYVNCFGLLSTINYCNFN*NLSLFINMNS 116
LLY NC L +NYCN +SL + S
Sbjct: 46 LLYDNCHPLAFLLNYCNKEAQMSLVTKIES 75
>03_01_0473 -
3639533-3639598,3639848-3639955,3640037-3640126,
3640203-3640394,3640952-3641018,3641472-3641512,
3641762-3641779,3641984-3642055,3642154-3642237,
3642296-3642373,3642703-3642759,3643374-3643469
Length = 322
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +3
Query: 165 LIVLRSPKQLTYNNE*RRKQGYGSSSARKIFHEIFEYFAFVSII 296
L+ L+ + + +E RK YG+++ KIF ++F+YF +++
Sbjct: 131 LVALKITQVYGFYDECLRK--YGNANVWKIFTDLFDYFPLTALV 172
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 228 YGSSSARKIFHEIFEYFAFVSII 296
YGS++ KIF ++F+YF +++
Sbjct: 195 YGSANVWKIFTDLFDYFPLTALV 217
>06_03_1346 +
29480482-29480676,29480754-29481067,29481164-29481236,
29481517-29481627,29481725-29481899,29481992-29482119,
29482310-29482370,29482893-29482963
Length = 375
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 528 SSDDVHWVCVYCWRWAMTC 584
+SD+ W +YC RW ++C
Sbjct: 161 ASDETLWRRLYCMRWGLSC 179
>05_03_0266 +
11303932-11304072,11304150-11304185,11304640-11304903,
11305157-11305524,11305603-11305773,11305853-11306141,
11306373-11306393
Length = 429
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 425 ILIRKRATCHYAASKAPQR*T*DWIRITINFDAA 526
++ K++TCHY S+ + DWI I + D A
Sbjct: 334 VITPKKSTCHYLNSRIDKH-AYDWIPIQLTIDEA 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,718
Number of Sequences: 37544
Number of extensions: 318087
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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