Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00133
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270...    28   6.0  
08_02_1127 + 24496838-24497590                                         28   7.9  

>02_04_0130 +
           20025414-20025531,20026357-20026585,20026909-20027032,
           20027441-20027497,20027613-20027804,20027882-20027959,
           20028437-20028619,20028715-20028795,20029196-20029228,
           20029448-20029513,20029591-20029683,20030106-20030231,
           20030395-20030508,20030973-20031068,20031159-20031256,
           20031416-20031831,20032025-20032473,20032810-20032905
          Length = 882

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 462 SNSYSLAFCKALPGPSAPGLRHQKEPRR 379
           S++ S++ C A P PSA G +  + PRR
Sbjct: 22  SSAASISCCAAPPPPSAKGSQESRTPRR 49


>08_02_1127 + 24496838-24497590
          Length = 250

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 610 CSVNGGGCCVRTNTTSVPGRSSASTRTSRMQGVRLA 503
           CS+ GGG C R    S P RS     +    GVR A
Sbjct: 142 CSLAGGGGCRRPCRWSRPSRSRRPCSSGSAPGVRTA 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,784,863
Number of Sequences: 37544
Number of extensions: 389641
Number of successful extensions: 1220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)