Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00047
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 127 6e-30
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 123 1e-28
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 122 2e-28
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 122 3e-28
08_01_0106 - 762287-763393,763752-764414 29 4.1
09_02_0379 - 8210401-8210567,8210944-8213827 28 5.4
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 28 5.4
04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301 28 7.2
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 28 7.2
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 27 9.5
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 27 9.5
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 127 bits (307), Expect = 6e-30
Identities = 54/82 (65%), Positives = 69/82 (84%)
Frame = +2
Query: 254 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 433
L+S+PFF GLV+Y+ SGPVV MVWEG VV TGR+++GATNP ++PGTIRGD + +GR
Sbjct: 54 LSSKPFFGGLVEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGR 113
Query: 434 NIIHGSDSVESAKKEIGLWFTD 499
N+IHGSDSVE+A+KEI LWF +
Sbjct: 114 NVIHGSDSVENARKEIALWFPE 135
Score = 67.3 bits (157), Expect = 1e-11
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = +3
Query: 105 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 254
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+D
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYAD 53
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 123 bits (297), Expect = 1e-28
Identities = 52/82 (63%), Positives = 68/82 (82%)
Frame = +2
Query: 254 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 433
L+ +PFFPGLV+Y+ SGPVV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGR
Sbjct: 52 LSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGR 111
Query: 434 NIIHGSDSVESAKKEIGLWFTD 499
N+IHGSDSV++ KKEI LWF +
Sbjct: 112 NVIHGSDSVDNGKKEIALWFPE 133
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +3
Query: 105 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 254
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+D
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYAD 51
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 122 bits (295), Expect = 2e-28
Identities = 54/85 (63%), Positives = 67/85 (78%)
Frame = +2
Query: 254 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 433
L RPFF GL ++SSGPV+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGR
Sbjct: 96 LKDRPFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGR 155
Query: 434 NIIHGSDSVESAKKEIGLWFTDKEV 508
NIIHGSD E+AK EIGLWF +E+
Sbjct: 156 NIIHGSDGPETAKAEIGLWFEPREL 180
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = +3
Query: 93 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 254
A + ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY D
Sbjct: 42 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHD 95
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 122 bits (293), Expect = 3e-28
Identities = 49/85 (57%), Positives = 68/85 (80%)
Frame = +2
Query: 254 LASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGR 433
L +PFFPGL++Y++SGPVV M WEG VV + R+++GATNP ++PGTIRGDL +Q GR
Sbjct: 53 LKEKPFFPGLIEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGR 112
Query: 434 NIIHGSDSVESAKKEIGLWFTDKEV 508
N++HGSDS ++ K+EI LWF + E+
Sbjct: 113 NVVHGSDSPDNGKREIALWFKEGEL 137
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +3
Query: 105 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSD 254
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY D
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKD 52
>08_01_0106 - 762287-763393,763752-764414
Length = 589
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 303 PELMYFTRPGKKGRDANRCS 244
PEL YF RPGK ++A CS
Sbjct: 554 PELGYFCRPGKLFKEARVCS 573
>09_02_0379 - 8210401-8210567,8210944-8213827
Length = 1016
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +2
Query: 323 WEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGLWFTDK 502
W GL ++ G+ + + N S G ++ +C+ ++ + +E+ LW T +
Sbjct: 424 WIGLGLIPIGKAICQSHNDGYSVIGQLKS-VCLLEEGDMRQTEVRLHDTIREMALWITSE 482
Query: 503 EVW 511
E W
Sbjct: 483 ENW 485
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 550 FTHKPSFHLQVSSPNFFVRKPEAYFLFSRFNA 455
+TH S L V SP FF R E++ SR NA
Sbjct: 197 YTHSESIALVVDSPQFFNRLAESF--ISRINA 226
>04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301
Length = 662
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 303 PELMYFTRPGKKGRDANRCSV 241
PEL YF RPGK +A CS+
Sbjct: 611 PELGYFCRPGKVFTEARVCSL 631
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 233 SPATLQRLASRPFFPGLVKYMSSGPVVP 316
S L ASRPF PGL++ PV+P
Sbjct: 14 SALVLLLAASRPFLPGLLEAALRAPVLP 41
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 457 AVRTMDDVTPNL-NAEITADSAGLRVSWVSCAKHLTASLHNIKAL 326
A+R+ +T L NA IT ++ G S VSC HL+ S +++ +
Sbjct: 2086 ALRSTQMITTVLPNANITPNNLGTLDSAVSCFLHLSESASSVETI 2130
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 179 FETFNNGAHKTTLYTIRLNHNKSTL 105
+ F +K T+YT+RL+HN+ L
Sbjct: 421 YRAFTWAEYKRTMYTLRLSHNRLDL 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,995
Number of Sequences: 37544
Number of extensions: 348403
Number of successful extensions: 826
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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