Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00032
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87...    29   1.4  
11_01_0453 + 3512645-3514246                                           28   3.1  
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942...    27   7.2  
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317...    27   7.2  
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    26   9.5  
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    26   9.5  

>02_01_0119 -
           876317-876610,876937-877099,877222-877302,877508-877570,
           878246-878355
          Length = 236

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 23  IALSSIL----QAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 190
           + LSS++    QAK+DK N+L+   ++L     + +  +   E + ET +  ++  K  +
Sbjct: 87  LELSSVINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEKLRETIKD-LKVEKNEL 145

Query: 191 RDETSSL 211
           RDE  +L
Sbjct: 146 RDEKVTL 152


>11_01_0453 + 3512645-3514246
          Length = 533

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 100 YRFSGPVYSSEGRVHWG 150
           YR SGP   +EGRV WG
Sbjct: 480 YRNSGPGSGTEGRVRWG 496


>03_05_0052 -
           20293197-20293310,20293938-20294024,20294133-20294270,
           20295009-20295128,20295236-20295343,20296053-20296133,
           20296216-20296456,20297010-20297305
          Length = 394

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 2   SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 181
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


>01_06_0020 +
           25630728-25631023,25631308-25631548,25631629-25631709,
           25632109-25632216,25632329-25632448,25632806-25632943,
           25633064-25633150,25633802-25633915
          Length = 394

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 2   SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 181
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 71  LARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDETSSLF-LNLNVKLGGCD 247
           L+R +  +GRT ++    Q+K E +G   +     VK  +   T+  F      KL    
Sbjct: 625 LSREMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVG 684

Query: 248 RLCSITALG*GIHMYH 295
           R C+  A+  G  M+H
Sbjct: 685 RQCNKKAINNGDGMWH 700


>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 178 HVSDDLTAGLPNELDLHLSTLAL 110
           HV DD+ A  P+++D H   L L
Sbjct: 108 HVQDDVAASSPDQMDHHTKDLLL 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,985,297
Number of Sequences: 37544
Number of extensions: 177920
Number of successful extensions: 389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)