Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A10
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0491 + 18043087-18043548                                         31   0.78 
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    29   3.1  
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620...    29   3.1  
06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615           29   3.1  
08_01_0100 - 714244-715461                                             28   7.2  
07_03_1336 - 25868238-25868284,25868731-25869079                       28   7.2  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    28   9.6  
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    28   9.6  
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645...    28   9.6  

>09_04_0491 + 18043087-18043548
          Length = 153

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 114 CGAHASGWAGPPANIALSQDGRNILDTPEVAQARAAHISALQQASKNNPNPNDDGSYD 287
           C ++ SGW    A+   S D R I+      +  +   +  ++  +N  + NDDG YD
Sbjct: 14  CNSNESGWTMYLASPTHSDDVRAIVSEGSNVEDGSGFSNERRRGKENKGHANDDGDYD 71


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +3

Query: 588 PAHQDWNAPAHQDWN---APAHQSWNGAPSWQSGAPAHQPANIRLXNDGSG 731
           P +Q  N P +Q  N   AP +    G PS+Q G   +         DG G
Sbjct: 342 PGYQGGNPPPYQGGNPGYAPGYHGQGGNPSYQQGGDNYNAGVPAYERDGQG 392


>08_01_0701 +
           6200351-6200470,6200879-6201104,6201502-6201747,
           6201818-6201868,6202231-6202491,6202587-6202639,
           6202705-6202819,6202985-6203239,6203773-6204827
          Length = 793

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 20  TXFIFLSLFHFCASFHYENEIHDRSSL 100
           T FI + ++HFC    YE E+H + S+
Sbjct: 507 TCFIIMYVWHFCTVKRYEFEMHSKVSM 533


>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
          Length = 390

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 135 WAGPPANIALSQDGRNILDTPEVAQARAAHISALQQ 242
           W+  P+++  S+DGR  +   E++ A +AHI  + +
Sbjct: 289 WSEIPSDVESSRDGRRYISGEELSDADSAHIVVMDK 324


>08_01_0100 - 714244-715461
          Length = 405

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +1

Query: 133 VGPAHPPTLLCLKMDAIFWTHPKSHRLVPHTFPLFSRLRKITPTQMT-TDHTTLDG 297
           VGPAH        +D + WT P+    V   F LF   R + P  +   DH    G
Sbjct: 313 VGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFALFDIYRVLRPGGLLWLDHFVFPG 368


>07_03_1336 - 25868238-25868284,25868731-25869079
          Length = 131

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 84  MIVVACLALACGAHASGWAGPPANIALSQDGRNI 185
           ++VVA LALACGA +   A  PA    S  G +I
Sbjct: 8   VVVVAVLALACGAASQSPAPAPAAGPASDCGSSI 41


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 588 PAHQDWNAPAHQDWNAPAHQSWNGAPSWQSGAPAHQ 695
           P +   N P +Q  N P +Q+  G P +  GAP +Q
Sbjct: 333 PGYHGGNPPPYQAGNPPPYQA--GNPVFAGGAPGYQ 366


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 548 TTMERPSSPGLECPRPPGLERSRSPGLECSRSPIMERSSLLAIRCPRSPA 697
           +T+   S PG      PG+ R+ S  L  S  P M RSS  +    R PA
Sbjct: 220 STISATSRPGSSSSNVPGISRATS--LSSSTVPSMSRSSSRSSTPTRQPA 267


>04_04_1138 -
           31162440-31163488,31163910-31164164,31164386-31164500,
           31164523-31164579,31164580-31164632,31164721-31164981,
           31165243-31165293,31165395-31165430,31165815-31166040,
           31166082-31166132,31166346-31166465
          Length = 757

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 26  FIFLSLFHFCASFHYENEIHDRSSL 100
           FI + ++HFC    YE E+H + S+
Sbjct: 475 FIIMYVWHFCTVKRYEFEMHSKVSM 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,034,491
Number of Sequences: 37544
Number of extensions: 360631
Number of successful extensions: 1358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)