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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0236
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0622 - 4625246-4627759                                           32   0.26 
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    30   0.81 
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667...    28   3.3  
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213...    27   7.5  
04_03_0201 - 12586324-12587131,12590080-12591512                       27   7.5  
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    27   10.0 
06_01_1166 + 9931955-9933406                                           27   10.0 
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   10.0 

>07_01_0622 - 4625246-4627759
          Length = 837

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 338 PITLPLYPQAMRLPEVSSVLDSVKALLYHGCRC 240
           P+TLPLYPQ+M   + S+  D  +A L H C C
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACL-HDCAC 427


>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 465 EYQKSVFYFPNNISLLLILVGFREYLKYNLKCLNTPSVMFGTSDHSTIV 319
           E + S +    N+   L+ VG RE+   +L    TP V   TSDH  I+
Sbjct: 338 EQRMSDYMLAENVPANLLCVGHREFPSDSLPVQETPLVSRKTSDHVDIL 386


>07_03_1566 +
           27766336-27766393,27766480-27766609,27766728-27766797,
           27767134-27767196,27767741-27767815,27768035-27768154,
           27768508-27768549,27768651-27768725,27768909-27769055,
           27769165-27769302,27769448-27769562,27769658-27769746,
           27770062-27770184
          Length = 414

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 65  ENNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYI 244
           E     F    TE+ + L      NP    +A   + VD+ R   Y+ PAKY    L ++
Sbjct: 159 ERRTFLFSATMTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHV 218

Query: 245 YNR 253
            N+
Sbjct: 219 LNK 221


>05_07_0076 -
           27520152-27520379,27520785-27521096,27521194-27521333,
           27521893-27521956,27522071-27522277,27522350-27522493,
           27522578-27522709,27522880-27524294,27524647-27524920,
           27526096-27526129,27527028-27527059
          Length = 993

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 139 VSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADF 35
           V+ DSQYQI+ T  +Q    D+    Q+ EL   F
Sbjct: 678 VNADSQYQIVTTAELQPSAEDISEEKQTMELITQF 712


>04_03_0201 - 12586324-12587131,12590080-12591512
          Length = 746

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 131 GTNPNGDHMAFGVNSVDSFRAQWYLQP 211
           G +P+G H+   +N+VDS R  + + P
Sbjct: 182 GWDPSGRHVGVDINNVDSRRGNYVVLP 208


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +2

Query: 35  KVSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQ---WY- 202
           +V WK   L      +FK+ +     + VLG+G NP+ D       +V  +      W  
Sbjct: 562 RVLWKLGTLPHGLLTFFKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVDYNGNMKPWLE 621

Query: 203 LQPAKYDK 226
           L   KYD+
Sbjct: 622 LAMTKYDQ 629


>06_01_1166 + 9931955-9933406
          Length = 483

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 217 FSGLQVPLGSETIDAVDSEGHVVAV 143
           F+GL+ PLGS   D  D+   VVAV
Sbjct: 101 FAGLRGPLGSWARDRADTHHRVVAV 125


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 53   IALWE-NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVD 181
            + LW+  N    +++  + +   V  V   P+G H+A G+NS D
Sbjct: 3076 VYLWDATNSSTSELVTVDEDNGPVTSVSWAPDGRHIAVGLNSSD 3119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,951
Number of Sequences: 37544
Number of extensions: 251657
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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