Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0122
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   4.6  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   4.6  
11_06_0661 - 26009838-26010950,26011302-26011802                       27   8.1  
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562...    27   8.1  
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320...    27   8.1  

>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 258 KSIVGTGYRGERLIEPSSSWFRPKFPSG 341
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 439 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 278
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


>11_06_0661 - 26009838-26010950,26011302-26011802
          Length = 537

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 192 HHLSGPSICAQSAPSFTDWK 133
           HHL GP+  + S+P    WK
Sbjct: 297 HHLHGPTSSSSSSPVMASWK 316


>06_01_0750 +
           5624983-5625173,5626229-5626291,5626421-5626967,
           5627075-5627226,5627317-5627533
          Length = 389

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 243 YGPPSGFPLTST*PGIV-HHLSGPSICAQSAPSFTDW 136
           +GP   FP +S+  G   HH+ G +  A +A S + W
Sbjct: 156 HGPVVQFPWSSSASGSAGHHVDGAAAAAATASSASSW 192


>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
            22632122-22632190,22632271-22632351,22632598-22632702,
            22632786-22633016,22633098-22634272,22634391-22634457,
            22636705-22637778,22638119-22638274,22638827-22638985,
            22639062-22639220,22639306-22639422,22639502-22639612,
            22639690-22640358
          Length = 1484

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 231  MEDRSDSDCKSIVGTGYRGERLIEPSSSWFRPKFP 335
            +E  S  DCKS     YRG R+ + +  +  P +P
Sbjct: 1260 LESSSSGDCKSTSDLSYRGCRIEDLAIEFALPGYP 1294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,743,640
Number of Sequences: 37544
Number of extensions: 270016
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)